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[184278_at]

Description R13D11.7 /REP_DB=WormBase Gene ID /WP=CE12794 /TR=O17012 /GB=AAB69947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 32.5
(-2.2)
A 		63.5
(2.3)
A 		27
(-3)
A 		68.1
(3)
A 		41
B 10.9
(-3)
A 		60.4
(3)
A 		40.2
(0.6)
A 		50.8
(1.8)
A 		50
C 12.7
(-3)
A 		146.1
(3)
M 		41.7
(-1.7)
A 		63.4
(-0.7)
A 		133
avr 18.7
(-3) 		90
(3) 		36.3
(-1.5) 		60.8
(0.5) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 6.4
(-2.8)
A 		18.9
(-1.5)
A 		11.6
(-2.2)
A 		4.4
(-3)
A 		61.4
(3)
A 		11.9
(-2.2)
A 		57
B 18.4
(-1)
A 		33.7
(3)
A 		10.9
(-3)
A 		11.3
(-2.9)
A 		28
(1.5)
A 		18.3
(-1.1)
A 		23
C 33.3
(2.1)
A 		38.6
(3)
A 		20.8
(-0.1)
A 		3.8
(-3)
A 		33.7
(2.2)
A 		14.3
(-1.2)
A 		35
avr 19.4
(-0.8) 		30.4
(1.2) 		14.4
(-1.6) 		6.5
(-3) 		41
(3) 		14.8
(-1.6) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 11.8
(1.2)
A 		13.8
(3)
A 		7.1
(-3)
A 		10
(-0.4)
A 		7
B 3.5
(-3)
A 		14.9
(3)
A 		9.3
(0.1)
A 		10.8
(0.8)
A 		11
C 4.2
(-3)
A 		42
(3)
M 		14.5
(-1.4)
A 		10.7
(-2)
A 		38
avr 6.5
(-3) 		23.6
(3) 		10.3
(-1.7) 		10.5
(-1.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-3)
A 		6.7
(-1.1)
A 		2.5
(-2.5)
A 		1.1
(-3)
A 		18.5
(3)
A 		2.9
(-2.4)
A 		17
B 6.4
(-0.4)
A 		11.2
(2.9)
A 		2.6
(-3)
A 		3
(-2.7)
A 		11.4
(3)
A 		6.8
(-0.1)
A 		9
C 12.3
(3)
A 		11.8
(2.7)
A 		5.3
(-0.7)
A 		0.8
(-3)
A 		10.9
(2.3)
A 		4.8
(-0.9)
A 		12
avr 6.6
(-0.5) 		9.9
(1.2) 		3.5
(-2.1) 		1.6
(-3) 		13.6
(3) 		4.8
(-1.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15829
Sequence Type Exemplar sequence
Representative Public ID R13D11.7 NCBI
Target Description R13D11.7 /REP_DB=WormBase Gene ID /WP=CE12794 /TR=O17012 /GB=AAB69947.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070926 NCBI Caenorhabditis elegans R13D11.7 (R13D11.7) mRNA, complete cds. 11/11 None
SNAP00000031823 ENSEMBL cdna:SNAP chromosome:CEL140:V:791178:793643:-1 11/11 None
GENEFINDER00000031841 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:791178:804418:-1 11/11 None
R13D11.7 ENSEMBL cdna:known chromosome:CEL140:V:791178:796191:-1 gene:R13D11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl R13D11.7
Entrez Gene 187866 Entrez gene
SwissProt O17012 EMBL-EBI
WormBase CE12794 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503327 R13D11.7 [Caenorhabditis elegans] gb|AAB69947.1| Hypothetical protein R13D11.7 [Caenorhabditis elegans] 0.0
blast NP_503328 R13D11.8 [Caenorhabditis elegans] gb|AAB69942.1| Hypothetical protein R13D11.8 [Caenorhabditis elegans] 0.0
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 1.0E-147
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 1.0E-139
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 3.9E-14
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 3.9E-14
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.3E-26
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 3.9E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.2E-17
Sequence
Target Sequence 
>C. ELEGANS:184278_AT
caacagatgcgtacactcacttcaaatacgaagactgggttccatccacccgtctgatct
ccagcacatcaggtgccgccccgaactacacaagtccaaagttggaacttatagggactc
tcccgttccactttgttgattctctctctaacattaaaaatattaaaatccgaatgccta
caattacgtgtacaccggctcctcacggtcttgttcagacgagcatacattacgctctcg
aacataaaatcgagacaatgccttgcattgagaaccatcgggaacacccaacgtatcggg
cactccctcacacctctattggcgagcaagagtcggaacttgaggacgtcgactacgaca
ttcccaacccggagttttcggatagcatcccccaatacgccgatcctgacaccacaacgc
ctgatcaactgaccgatcacgccgaggctaacctacctgtaggtcgctccagggattata
tcccacggaaagccaaagccccgtacattaactatgtacacactctggttgtcacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGATGCGTACACTCACTTCAA 302 189 3764 Antisense
ATACGAAGACTGGGTTCCATCCACC 425 23 3789 Antisense
TGATCTCCAGCACATCAGGTGCCGC 526 565 3818 Antisense
CTCCTCACGGTCTTGTTCAGACGAG 662 233 3962 Antisense
TGCCTTGCATTGAGAACCATCGGGA 163 581 4022 Antisense
TCGGGAACACCCAACGTATCGGGCA 407 603 4041 Antisense
CTCACACCTCTATTGGCGAGCAAGA 24 229 4070 Antisense
ACAACGCCTGATCAACTGACCGATC 415 111 4177 Antisense
GCCGAGGCTAACCTACCTGTAGGTC 246 285 4204 Antisense
GTAGGTCGCTCCAGGGATTATATCC 15 455 4222 Antisense
ATGTACACACTCTGGTTGTCACGTC 670 47 4277 Antisense
Sequence Source Affymetrix Proprietary Database