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[184277_at]

Description W06A11.1 /REP_DB=WormBase Gene ID /WP=CE05039 /TR=Q23183 /GB=AAA82412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 65
(-3)
A 		147.2
(0.3)
A 		212.9
(3)
A 		130.9
(-0.3)
A 		148
B 90.9
(-3)
A 		154.7
(1.1)
A 		183.7
(3)
A 		96.9
(-2.6)
A 		93
C 92.1
(-3)
A 		255.8
(3)
A 		149.3
(-0.9)
A 		112.6
(-2.2)
A 		164
avr 82.7
(-3) 		185.9
(3) 		182
(2.8) 		113.5
(-1.2) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 113.5
(0.2)
A 		27.3
(-3)
A 		76.8
(-1.2)
A 		150.4
(1.5)
A 		190.1
(3)
A 		40.5
(-2.5)
A 		163
B 25.1
(-3)
A 		116
(0.3)
A 		62.4
(-1.7)
A 		182.9
(2.7)
A 		192.1
(3)
A 		44.9
(-2.3)
A 		167
C 113.8
(-0.2)
A 		120.3
(0.2)
A 		111
(-0.4)
A 		113.1
(-0.3)
A 		167.9
(3)
A 		66.9
(-3)
A 		101
avr 84.1
(-1.5) 		87.9
(-1.3) 		83.4
(-1.5) 		148.8
(1.4) 		183.4
(3) 		50.8
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 23.7
(-2.3)
A 		32
(-0.9)
A 		55.6
(3)
A 		19.2
(-3)
A 		36
B 29
(-0.7)
A 		38.2
(1.8)
A 		42.6
(3)
A 		20.6
(-3)
A 		22
C 30.5
(-1.7)
A 		73.5
(3)
A 		52
(0.6)
A 		19
(-3)
A 		55
avr 27.7
(-1.4) 		47.9
(2.6) 		50.1
(3) 		19.6
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 20.9
(-1.6)
A 		9.7
(-3)
A 		16.7
(-2.1)
A 		38.2
(0.6)
A 		57.4
(3)
A 		9.9
(-3)
A 		48
B 8.7
(-3)
A 		38.6
(-0.4)
A 		15.2
(-2.4)
A 		48.4
(0.4)
A 		78
(3)
A 		16.8
(-2.3)
A 		69
C 42.2
(0.7)
A 		36.7
(-0.3)
A 		28.3
(-1.9)
A 		22.8
(-2.9)
A 		54.3
(3)
A 		22.4
(-3)
A 		32
avr 23.9
(-2) 		28.3
(-1.5) 		20.1
(-2.5) 		36.5
(-0.4) 		63.2
(3) 		16.4
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5911
Sequence Type Exemplar sequence
Representative Public ID W06A11.1 NCBI
Target Description W06A11.1 /REP_DB=WormBase Gene ID /WP=CE05039 /TR=Q23183 /GB=AAA82412.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062317
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019981 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4067191:4069682:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062317 8/11 Cross Hyb Matching Probes None
SNAP00000019980 8/11 Cross Hyb Matching Probes None
W06A11.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4067616-4069750(+) 95.81 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE71524 Hypothetical protein CBG18459 [Caenorhabditis briggsae] 7.0E-79
blast AAA82412 Hypothetical protein W06A11.1 [Caenorhabditis elegans] ref|NP_494718.2| W06A11.1 [Caenorhabditis elegans] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:184277_AT
gccaccctttcgtgtaacatttgtgccgatgtgggtctcgacgagtttggagaatgtcta
tcgcaattcgattacgactgcagtccatatgccaggagattcccggcaagtgagaaaatc
tactgtagaagcacgaggacaaggaatgcaacaagtaaatcctacacaataatgaaggaa
tgcatttcggaacaagaccactacaagaattatcctcagaaaggctacagcattgacgag
gaatgtgatctggtagacgttcagggagttgagatggcctactgcctctgcagatcggat
cactgtaataaaaacccgattgccgagcagttcatggatttcgagaaaaaacatcctgag
ctcttcggtgatattgaagaagctcgtccgccaagccctcctagagagccacctacgttc
aggtcaggagaagctccattgaagattcagccgctacctcctggtatggcgcagcacgta
ccgtctccgagctcttttgccgcaccaattttgaatccaccggcgattgttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCCTTTCGTGTAACATTTGTG 604 275 64 Antisense
TTTGTGCCGATGTGGGTCTCGACGA 695 665 83 Antisense
TACGACTGCAGTCCATATGCCAGGA 234 647 136 Antisense
CTGCCTCTGCAGATCGGATCACTGT 291 237 345 Antisense
AAAACCCGATTGCCGAGCAGTTCAT 491 129 374 Antisense
AAAACATCCTGAGCTCTTCGGTGAT 1 131 411 Antisense
TATTGAAGAAGCTCGTCCGCCAAGC 548 659 435 Antisense
TCCTAGAGAGCCACCTACGTTCAGG 187 375 462 Antisense
CATTGAAGATTCAGCCGCTACCTCC 606 217 500 Antisense
TTGCCGCACCAATTTTGAATCCACC 614 699 560 Antisense
TTGAATCCACCGGCGATTGTTCCAA 61 705 574 Antisense
Sequence Source Affymetrix Proprietary Database