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[184276_at]

Description F46F11.6 /REP_DB=WormBase Gene ID /WP=CE10606 /TR=P91305 /GB=AAK21383.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 66      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 825.3
(2)
P 		606.3
(-1)
P 		463.4
(-3)
P 		899.8
(3)
P 		436
B 912.5
(1.9)
P 		664.6
(-1.3)
P 		536
(-3)
P 		995.6
(3)
P 		460
C 959.8
(2.3)
P 		623.5
(-2)
P 		545.1
(-3)
P 		1012.2
(3)
P 		467
avr 899.2
(2.1) 		631.5
(-1.5) 		514.8
(-3) 		969.2
(3) 		454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 727.5
(-1)
P 		720.1
(-1.2)
P 		787.1
(1.1)
P 		774.8
(0.6)
P 		666.7
(-3)
P 		844.9
(3)
P 		178
B 715.3
(-0.9)
P 		604.8
(-3)
P 		764.1
(0.1)
P 		685
(-1.5)
P 		709.9
(-1)
P 		915.7
(3)
P 		311
C 695
(-2.7)
P 		687.1
(-3)
P 		713.7
(-2.1)
P 		782.4
(0.2)
P 		742.8
(-1.2)
P 		868.2
(3)
P 		181
avr 712.6
(-1.8) 		670.7
(-3) 		755
(-0.5) 		747.4
(-0.8) 		706.5
(-2) 		876.3
(3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 300.5
(3)
P 		131.6
(-2.6)
P 		121.1
(-3)
P 		131.7
(-2.6)
P 		179
B 291
(3)
P 		164.1
(-1.6)
P 		124.2
(-3)
P 		212.2
(0.2)
P 		167
C 317.7
(3)
P 		179.3
(-2.6)
P 		190
(-2.2)
P 		170.7
(-3)
P 		147
avr 303.1
(3) 		158.3
(-2.5) 		145.1
(-3) 		171.5
(-2) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 134.1
(-3)
P 		256.1
(3)
P 		171.4
(-1.2)
P 		196.5
(0.1)
P 		201.2
(0.3)
P 		205.7
(0.5)
P 		122
B 248.9
(-0.5)
P 		201.3
(-2.3)
P 		185.6
(-2.8)
P 		181.4
(-3)
P 		288.4
(1)
P 		341.5
(3)
P 		160
C 257.6
(1.5)
P 		209.7
(-0.6)
P 		181.7
(-1.9)
P 		157.3
(-3)
P 		240.4
(0.7)
P 		290.6
(3)
P 		133
avr 213.5
(-0.9) 		222.4
(-0.4) 		179.6
(-2.9) 		178.4
(-3) 		243.3
(0.9) 		279.3
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.562
Sequence Type Exemplar sequence
Representative Public ID F46F11.6 NCBI
Target Description F46F11.6 /REP_DB=WormBase Gene ID /WP=CE10606 /TR=P91305 /GB=AAK21383.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059243 NCBI Caenorhabditis elegans F46F11.6 (F46F11.6) mRNA, complete cds. 11/11 None
SNAP00000023448 ENSEMBL cdna:SNAP chromosome:CEL140:I:5616865:5618416:-1 11/11 None
GENEFINDER00000023461 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5616865:5618416:-1 11/11 None
F46F11.6 ENSEMBL cdna:known chromosome:CEL140:I:5616615:5618554:-1 gene:F46F11.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5617018-5618416(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F11.6
Entrez Gene 172218 Entrez gene
SwissProt P91305 EMBL-EBI
WormBase CE30535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21383 Hypothetical protein F46F11.6 [Caenorhabditis elegans] ref|NP_491644.2| F46F11.6 [Caenorhabditis elegans] 0.0
blast T25766 hypothetical protein F46F11.6 - Caenorhabditis elegans 0.0
blast CAE68922 Hypothetical protein CBG14901 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:184276_AT
atcgccgtccgaagttttaacatcagaacaaacgactatcgtttagtaacaaaagcattg
acagctccaaaaaacaaaggacaagatatatcattgttggcaaatgaccacggaggaatg
gaaactgcagtatttgacattgacaagttcaagtacgcccgcagtgtgatcctttggtcc
ctggtcagcaacattcaagatcatcaactttattctttatctgcacacaatattcgttta
cacagtgaattcattacatccaattgcattgccaaaatgattcaggaatggaaagagggc
aggagatccctggaacgattgcatataacttcgccaataattgatttggatacaattgtg
agacaagtgcttggcgtctgctggaaaaatatgactgacatttgttcaattatttggaga
gaagtagacgaagaagggtattcatatgcggtgcgtggaccaacatatgacattcctgca
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCCGTCCGAAGTTTTAACATCA 6 39 457 Antisense
GAAACTGCAGTATTTGACATTGACA 629 357 577 Antisense
TTGGTCCCTGGTCAGCAACATTCAA 697 685 630 Antisense
AACTTTATTCTTTATCTGCACACAA 605 139 662 Antisense
ATTCATTACATCCAATTGCATTGCC 541 7 705 Antisense
GGAGATCCCTGGAACGATTGCATAT 460 517 758 Antisense
TTGCATATAACTTCGCCAATAATTG 332 701 775 Antisense
GAGACAAGTGCTTGGCGTCTGCTGG 207 393 816 Antisense
GAAGGGTATTCATATGCGGTGCGTG 174 335 889 Antisense
TGCGGTGCGTGGACCAACATATGAC 281 583 903 Antisense
GACCAACATATGACATTCCTGCAGC 533 383 914 Antisense
Sequence Source Affymetrix Proprietary Database