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[184275_at]

Description Y47H9C.13 /REP_DB=WormBase Gene ID /WP=CE25305 /TR=Q9NAH0 /GB=CAB76743.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 23.6
(-1.7)
A 		28.3
(-1.3)
A 		7.4
(-3)
A 		80
(3)
A 		73
B 6.7
(-3)
A 		9.1
(0.6)
A 		9.3
(0.9)
A 		10.7
(3)
A 		4
C 6
(-3)
A 		6.7
(-2.9)
A 		21.8
(-1.6)
A 		73.6
(3)
A 		68
avr 12.1
(-3) 		14.7
(-2.6) 		12.8
(-2.9) 		54.8
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.4
(-3)
A 		19.6
(3)
A 		11.1
(-0.6)
A 		7.7
(-2)
A 		5.4
(-3)
A 		11.1
(-0.6)
A 		14
B 15.3
(3)
A 		10.8
(0.9)
A 		6.2
(-1.3)
A 		9.2
(0.1)
A 		6.8
(-1)
A 		2.7
(-3)
A 		13
C 7.1
(-2.3)
A 		5.4
(-2.7)
A 		22
(1.3)
A 		18.1
(0.3)
A 		29.2
(3)
A 		4.3
(-3)
A 		25
avr 9.3
(-0.5) 		11.9
(1.5) 		13.1
(2.5) 		11.7
(1.4) 		13.8
(3) 		6
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(1.1)
A 		6.2
(-0.4)
A 		1.9
(-3)
A 		11.7
(3)
A 		10
B 2.1
(-3)
A 		2.3
(3)
A 		2.2
(0)
A 		2.3
(3)
A 		0
C 2
(-2.9)
A 		1.9
(-3)
A 		7.6
(0.3)
A 		12.4
(3)
A 		11
avr 4.2
(-2.2) 		3.5
(-3) 		3.9
(-2.5) 		8.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1
(-3)
A 		7
(3)
A 		2.4
(-1.6)
A 		2
(-2)
A 		1.6
(-2.4)
A 		2.7
(-1.3)
A 		6
B 5.3
(3)
A 		3.6
(0.6)
A 		1.5
(-2.3)
A 		2.4
(-1)
A 		2.8
(-0.5)
A 		1
(-3)
A 		4
C 2.6
(-2.2)
A 		1.6
(-2.9)
A 		5.6
(0.1)
A 		3.6
(-1.4)
A 		9.4
(3)
A 		1.5
(-3)
A 		8
avr 3
(-0.3) 		4.1
(2) 		3.2
(0.1) 		2.7
(-0.9) 		4.6
(3) 		1.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.983
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.13 NCBI
Target Description Y47H9C.13 /REP_DB=WormBase Gene ID /WP=CE25305 /TR=Q9NAH0 /GB=CAB76743.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060610
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000036901 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11896098:11899355:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032093 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6315566-6316431(+) 95.7 95.7
chrI:11895797-11896703(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42375 Hypothetical protein Y47H9C.15 [Caenorhabditis elegans] ref|NP_493013.1| Y47H9C.15 [Caenorhabditis elegans] 2.0E-71
blast CAA21735 Hypothetical protein Y47H9C.6 [Caenorhabditis elegans] ref|NP_493011.2| CaSPase family member (csp-3) [Caenorhabditis elegans] gb|AAC98297.1| caspase-related protein 3 [Caenorhabditis elegans] 5.0E-34
blast AAC98296 caspase-related protein 2B [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.3E-15
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.1E-21
Sequence
Target Sequence 
>C. ELEGANS:184275_AT
ctcccgctgatgcagcaccaaaacctccactggctggaaccttcgatccaaactaccaat
ctcttgctggaattggagagagtcgtttcgataggaaggatggagcaccgtctgtaagag
ggggaggggcacatgcgaattccggaaatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCGCTGATGCAGCACCAAAACC 100 235 110 Antisense
CTGGAACCTTCGATCCAAACTACCA 487 239 143 Antisense
CTTGCTGGAATTGGAGAGAGTCGTT 485 217 172 Antisense
GAGAGAGTCGTTTCGATAGGAAGGA 531 391 185 Antisense
ATAGGAAGGATGGAGCACCGTCTGT 552 21 200 Antisense
AAGGATGGAGCACCGTCTGTAAGAG 38 161 205 Antisense
GGAGCACCGTCTGTAAGAGGGGGAG 173 499 211 Antisense
TAAGAGGGGGAGGGGCACATGCGAA 226 637 224 Antisense
AGGGGGAGGGGCACATGCGAATTCC 52 57 228 Antisense
GGGGCACATGCGAATTCCGGAAATC 382 499 235 Antisense
GGCACATGCGAATTCCGGAAATCAC 595 535 237 Antisense
Sequence Source Affymetrix Proprietary Database