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[184273_at] 7TM receptor, srbc family

Description Y32B12B.3 /REP_DB=WormBase Gene ID /WP=CE19064 /TR=Q9XX34 /GB=CAA21006.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 19      6grp_cgc > 04      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 29.6
(-3)
A 		35.1
(-2.6)
A 		31
(-2.9)
A 		120.2
(3)
M 		91
B 58.4
(1.8)
A 		70.8
(3)
A 		9.4
(-3)
A 		70
(2.9)
A 		61
C 28.1
(-2.4)
A 		59
(-0.6)
M 		17.6
(-3)
A 		119.1
(3)
A 		102
avr 38.7
(-1.6) 		55
(-0.4) 		19.3
(-3) 		103.1
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 45.7
(2.9)
A 		5.9
(-3)
A 		29.4
(0.5)
A 		6.2
(-3)
A 		46.3
(3)
A 		38.1
(1.8)
A 		40
B 31.1
(1.5)
A 		37.5
(3)
A 		26.5
(0.5)
A 		32.1
(1.8)
A 		11.2
(-3)
A 		21.4
(-0.7)
A 		26
C 27.3
(-1.2)
A 		62.3
(3)
A 		19.3
(-2.2)
A 		12.3
(-3)
A 		47.9
(1.3)
A 		31.1
(-0.7)
A 		50
avr 34.7
(2.8) 		35.2
(3) 		25.1
(-0.3) 		16.9
(-3) 		35.1
(3) 		30.2
(1.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.8
(-1.1)
A 		7.6
(-3)
A 		8.1
(-2.7)
A 		17.6
(3)
M 		10
B 18.6
(3)
A 		17.5
(2.6)
A 		2.2
(-3)
A 		14.9
(1.6)
A 		16
C 9.3
(-1.6)
A 		17
(1.7)
M 		6.1
(-3)
A 		20.1
(3)
A 		14
avr 12.9
(0.7) 		14
(1.3) 		5.5
(-3) 		17.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.4
(0.3)
A 		2.1
(-2.8)
A 		6.4
(-0.7)
A 		1.6
(-3)
A 		14
(3)
A 		9.3
(0.7)
A 		12
B 10.8
(1.7)
A 		12.5
(3)
A 		6.4
(-1.6)
A 		8.5
(0)
A 		4.5
(-3)
A 		8
(-0.4)
A 		8
C 10.1
(-0.2)
A 		19
(3)
A 		4.9
(-2.1)
A 		2.5
(-3)
A 		15.5
(1.7)
A 		10.4
(-0.1)
A 		17
avr 9.8
(1.7) 		11.2
(2.9) 		5.9
(-1.6) 		4.2
(-3) 		11.3
(3) 		9.2
(1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14634
Sequence Type Exemplar sequence
Representative Public ID Y32B12B.3 NCBI
Target Description Y32B12B.3 /REP_DB=WormBase Gene ID /WP=CE19064 /TR=Q9XX34 /GB=CAA21006.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074788 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-65) (srbc-65) mRNA, complete cds. 11/11 None
Y32B12B.3 ENSEMBL cdna:known chromosome:CEL140:V:16553562:16554864:1 gene:Y32B12B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16553561-16554864(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-65
Ensembl Y32B12B.3
Entrez Gene 189567 Entrez gene
SwissProt Q9XX34 EMBL-EBI
WormBase CE19064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21006 Hypothetical protein Y32B12B.3 [Caenorhabditis elegans] ref|NP_507189.1| Serpentine Receptor, class BC (class B-like) family member (srbc-65) [Caenorhabditis elegans] 1.0E-156
blast AAC17793 Serpentine receptor, class bc (class b-like) protein 66 [Caenorhabditis elegans] ref|NP_503986.1| Serpentine Receptor, class BC (class B-like) family member (srbc-66) [Caenorhabditis elegans] 3.0E-66
blast NP_740807 Serpentine Receptor, class BC (class B-like) family member (srbc-64) [Caenorhabditis elegans] gb|AAL32239.1| Serpentine receptor, class bc (class b-like) protein 64 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.5E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507189.1 6 10-32,45-67,82-104,125-144,178-197,217-239
Y32B12B.3 6 10-32,45-67,82-104,125-144,178-197,217-239
Sequence
Target Sequence 
>C. ELEGANS:184273_AT
attcgaaacgccacattcttcatgctttggcctataattccacttggaattgttcgatca
atccttatgctttcaataaatatcgacagacttggagcattgtattttccgattttctat
ttcaaatatcatcggaaatttcccatttccatcatagtgattctcacattaacatacata
ttagttgatcaatatgtaacgtttgaatattgcaactatataatatcagttcctttggat
tgctttgatttccaatgtgccgtcaatcagtgtgtattcgaacattggttttatcgtgat
caagtgatgtatttttcaaacggatttttgtcgattttgctttgtttccgcctgtacatt
tggaataccttcaaaaaggcagccagtagtcatgcactttctagagcgacacgaattgct
gttctggactcaatcgtaattctctgcttccatataattccgcttctagtctttcgatat
tttcccactgtgaactactataatttcggcccatggacggcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGAAACGCCACATTCTTCATGC 454 9 241 Antisense
CATGCTTTGGCCTATAATTCCACTT 384 211 261 Antisense
TCCAATGTGCCGTCAATCAGTGTGT 509 585 491 Antisense
CTTTGTTTCCGCCTGTACATTTGGA 303 223 580 Antisense
GGCAGCCAGTAGTCATGCACTTTCT 657 535 618 Antisense
GACACGAATTGCTGTTCTGGACTCA 574 367 648 Antisense
TGGACTCAATCGTAATTCTCTGCTT 155 549 665 Antisense
TTCTCTGCTTCCATATAATTCCGCT 274 693 680 Antisense
TAATTCCGCTTCTAGTCTTTCGATA 253 633 695 Antisense
CTTTCGATATTTTCCCACTGTGAAC 64 223 711 Antisense
TAATTTCGGCCCATGGACGGCAGTT 406 323 741 Antisense
Sequence Source Affymetrix Proprietary Database