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[184272_at]

Description C13F10.5 /REP_DB=WormBase Gene ID /WP=CE27682 /TR=O01486 /GB=AAC47962.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 78      4grp_total > 02      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 56.2
(-3)
P 		131.3
(-1.8)
A 		72.7
(-2.7)
A 		443.7
(3)
P 		388
B 139.1
(-0.7)
A 		30.1
(-3)
A 		122.7
(-1)
A 		310.7
(3)
P 		281
C 80.7
(-2.7)
P 		149.9
(-1.7)
A 		62.1
(-3)
A 		465.5
(3)
P 		403
avr 92
(-2.9) 		103.8
(-2.7) 		85.8
(-3) 		406.6
(3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 153.9
(2.3)
A 		43.9
(-3)
A 		123.4
(0.8)
P 		78.7
(-1.3)
P 		169.2
(3)
P 		155.1
(2.3)
P 		125
B 135.5
(0.3)
P 		80.9
(-3)
P 		85.8
(-2.7)
P 		113.3
(-1)
P 		116.7
(-0.8)
P 		178.9
(3)
P 		98
C 41.6
(-3)
A 		179.5
(1.6)
P 		83.1
(-1.6)
A 		68.1
(-2.1)
P 		116.4
(-0.5)
P 		220.3
(3)
P 		179
avr 110.3
(-1.6) 		101.4
(-2.1) 		97.4
(-2.3) 		86.7
(-3) 		134.1
(-0.1) 		184.8
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 20.5
(-2.8)
P 		28.5
(-1.8)
A 		19
(-3)
A 		65
(3)
P 		46
B 44.4
(0.8)
A 		7.4
(-3)
A 		28.4
(-0.9)
A 		66.2
(3)
P 		59
C 26.7
(-2.5)
P 		43.1
(-0.7)
A 		21.6
(-3)
A 		78.5
(3)
P 		57
avr 30.5
(-2) 		26.3
(-2.6) 		23
(-3) 		69.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 28.4
(-0.8)
A 		15.6
(-3)
A 		26.9
(-1.1)
P 		20
(-2.3)
P 		51
(3)
P 		37.8
(0.8)
P 		35
B 47.2
(0.5)
P 		26.9
(-2.2)
P 		20.8
(-3)
P 		30
(-1.8)
P 		47.4
(0.5)
P 		66.7
(3)
P 		46
C 15.4
(-2.8)
A 		54.8
(1.1)
P 		21.2
(-2.3)
A 		13.7
(-3)
P 		37.7
(-0.6)
P 		73.8
(3)
P 		60
avr 30.3
(-1.6) 		32.4
(-1.2) 		23
(-2.7) 		21.2
(-3) 		45.4
(0.8) 		59.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11584
Sequence Type Exemplar sequence
Representative Public ID C13F10.5 NCBI
Target Description C13F10.5 /REP_DB=WormBase Gene ID /WP=CE27682 /TR=O01486 /GB=AAC47962.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072428
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004762 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7208545:7221582:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072428 7/11 Cross Hyb Matching Probes A 
SNAP00000004758 7/11 Cross Hyb Matching Probes None
C13F10.5 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7220270-7221583(-) 96.12 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47965 Hypothetical protein C13F10.4 [Caenorhabditis elegans] ref|NP_504828.1| C13F10.4 [Caenorhabditis elegans] 0.0
blast CAE72021 Hypothetical protein CBG19103 [Caenorhabditis briggsae] 0.0
blast XP_863392 PREDICTED: similar to CG2747-PB, isoform B isoform 7 [Canis familiaris] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004762 1 108-130
Sequence
Target Sequence 
>C. ELEGANS:184272_AT
tgagtgatgtgctccgaaaccttcaagaatttcgaaaagagaaagagaaaataaagttaa
aagaaaggcaagaagtcgagcaaactacacaaaaagacgtggaaaatgtgataaagaaag
aatcgccgaatggacgggaatggaactttttgacaaaggctgagccggtgccagaggatt
atgtactccttaaaggcgcacacatgcatcaaaaaactttctcccgttttcttctttcct
atcctgagctctctatattttcagaagagcagtctgtggtctctacacgaatcgccgtgg
ttgtatacgtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGTGATGTGCTCCGAAACCTTCA 651 567 14 Antisense
GAAAGAATCGCCGAATGGACGGGAA 178 359 129 Antisense
TGGACGGGAATGGAACTTTTTGACA 631 543 144 Antisense
TTGACAAAGGCTGAGCCGGTGCCAG 393 701 163 Antisense
GAGCCGGTGCCAGAGGATTATGTAC 433 385 175 Antisense
TATGTACTCCTTAAAGGCGCACACA 112 655 193 Antisense
CATGCATCAAAAAACTTTCTCCCGT 579 209 216 Antisense
TTTCCTATCCTGAGCTCTCTATATT 668 669 248 Antisense
GAAGAGCAGTCTGTGGTCTCTACAC 419 339 277 Antisense
TGTGGTCTCTACACGAATCGCCGTG 356 553 288 Antisense
GAATCGCCGTGGTTGTATACGTAGT 158 329 302 Antisense
Sequence Source Affymetrix Proprietary Database