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[184271_at]

Description K02E7.11 /REP_DB=WormBase Gene ID /WP=CE28409 /TR=O17257 /GB=AAB71020.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 90.4
(0.5)
P 		64.2
(-2.4)
A 		59.1
(-3)
A 		112.8
(3)
P 		54
B 72.1
(-2)
M 		63.7
(-3)
A 		67
(-2.6)
P 		114.5
(3)
P 		51
C 60.4
(-2.3)
A 		48.6
(-3)
A 		47.8
(-3)
A 		148.8
(3)
P 		101
avr 74.3
(-1.5) 		58.8
(-2.9) 		58
(-3) 		125.4
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 90.7
(0.9)
P 		45.3
(-3)
M 		114.6
(3)
P 		96.8
(1.5)
A 		78.2
(-0.2)
A 		82
(0.2)
M 		69
B 59.7
(-3)
M 		79.2
(-0.1)
A 		100.6
(3)
A 		91.9
(1.7)
M 		60.8
(-2.8)
P 		69.5
(-1.6)
A 		41
C 66.9
(-1.2)
A 		94.3
(3)
P 		77.2
(0.3)
A 		81.7
(1)
M 		55.6
(-3)
A 		68.7
(-1)
A 		39
avr 72.4
(-1.6) 		72.9
(-1.5) 		97.5
(3) 		90.1
(1.6) 		64.9
(-3) 		73.4
(-1.4) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 32.9
(3)
P 		13.9
(-3)
A 		15.4
(-2.5)
A 		16.5
(-2.2)
P 		19
B 23
(2.1)
M 		15.7
(-2.9)
A 		15.5
(-3)
P 		24.4
(3)
P 		9
C 20
(0.2)
A 		14
(-3)
A 		16.7
(-1.5)
A 		25.1
(3)
P 		11
avr 25.3
(3) 		14.5
(-3) 		15.9
(-2.2) 		22
(1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 16.7
(-2.6)
P 		16.1
(-3)
M 		25
(3)
P 		24.6
(2.7)
A 		23.6
(2.1)
A 		20
(-0.4)
M 		9
B 20.8
(-3)
M 		26.4
(3)
A 		24.4
(0.9)
A 		24.3
(0.8)
M 		24.7
(1.2)
P 		25.9
(2.5)
A 		6
C 24.8
(1.1)
A 		28.8
(3)
P 		19.6
(-1.5)
A 		16.4
(-3)
M 		18
(-2.2)
A 		23
(0.2)
A 		12
avr 20.8
(-3) 		23.8
(3) 		23
(1.4) 		21.8
(-1) 		22.1
(-0.4) 		23
(1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4981
Sequence Type Exemplar sequence
Representative Public ID K02E7.11 NCBI
Target Description K02E7.11 /REP_DB=WormBase Gene ID /WP=CE28409 /TR=O17257 /GB=AAB71020.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061505(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061505 NCBI Caenorhabditis elegans K02E7.11 (K02E7.11) mRNA, complete cds. 10/11 None
K02E7.11 ENSEMBL cdna:known chromosome:CEL140:II:1074769:1075511:-1 gene:K02E7.11 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1075096-1075510(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E7.11
Entrez Gene 173492 Entrez gene
SwissProt O17257 EMBL-EBI
WormBase CE28409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71020 Hypothetical protein K02E7.11 [Caenorhabditis elegans] ref|NP_493906.1| K02E7.11 [Caenorhabditis elegans] 1.0E-72
blast AAF60746 Hypothetical protein Y51H7BR.3 [Caenorhabditis elegans] ref|NP_493988.1| Y51H7BR.3 [Caenorhabditis elegans] 2.0E-49
blast CAE62892 Hypothetical protein CBG07080 [Caenorhabditis briggsae] 5.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493906.1 4 16-38,53-75,82-104,109-128
K02E7.11 4 16-38,53-75,82-104,109-128
Sequence
Target Sequence 
>C. ELEGANS:184271_AT
atccggtgcataatttttctgaccctacaagtcctgattagcctgttctttctacttggc
cttgcgccagtttctttggattttgatattgagtttgtacataatgcaaccaattctact
tgtcctagttacgatcaactttctctggttcatctcgtcgatttccgccctgatatgtgt
gcttcaggaccaaaaacgatatctgcgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGGTGCATAATTTTTCTGACCC 427 39 49 Antisense
TTTTTCTGACCCTACAAGTCCTGAT 565 673 62 Antisense
CAAGTCCTGATTAGCCTGTTCTTTC 115 185 76 Antisense
TTAGCCTGTTCTTTCTACTTGGCCT 219 681 86 Antisense
CCTTGCGCCAGTTTCTTTGGATTTT 446 269 108 Antisense
GAGTTTGTACATAATGCAACCAATT 466 399 139 Antisense
GCAACCAATTCTACTTGTCCTAGTT 553 319 154 Antisense
GTCCTAGTTACGATCAACTTTCTCT 253 473 170 Antisense
TTCCGCCCTGATATGTGTGCTTCAG 257 699 211 Antisense
ATATGTGTGCTTCAGGACCAAAAAC 671 21 221 Antisense
GACCAAAAACGATATCTGCGATTTC 25 383 236 Antisense
Sequence Source Affymetrix Proprietary Database