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[184270_s_at]

Description F54D12.7 /REP_DB=WormBase Gene ID /WP=CE17872 /TR=O44831 /GB=AAB94990.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 35.2
(-2.4)
A 		32.3
(-2.7)
A 		28.4
(-3)
A 		101
(3)
A 		73
B 26
(-0.1)
A 		45.5
(3)
A 		7.8
(-3)
A 		20.3
(-1)
A 		38
C 31.3
(-1.3)
A 		12.9
(-2.4)
A 		1.9
(-3)
A 		103.7
(3)
A 		102
avr 30.8
(-1.3) 		30.2
(-1.3) 		12.7
(-3) 		75
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 7.4
(-2.8)
A 		5.9
(-2.9)
A 		52
(3)
A 		12.2
(-2.1)
A 		31.5
(0.4)
A 		5.5
(-3)
A 		47
B 8.2
(1.6)
A 		7.3
(0.6)
A 		7.2
(0.5)
A 		3.8
(-3)
A 		9.6
(3)
A 		5.1
(-1.7)
A 		6
C 10.1
(3)
A 		5.4
(-0.7)
A 		2.5
(-3)
A 		8.4
(1.7)
A 		7.4
(0.9)
A 		7.2
(0.7)
A 		8
avr 8.6
(-1.9) 		6.2
(-2.9) 		20.6
(3) 		8.1
(-2.1) 		16.2
(1.2) 		5.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.8
(1.5)
A 		7
(-3)
A 		7.4
(-2.7)
A 		14.8
(3)
A 		8
B 8.3
(1.1)
A 		11.2
(3)
A 		1.8
(-3)
A 		4.3
(-1.4)
A 		9
C 10.4
(0.5)
A 		3.7
(-1.9)
A 		0.7
(-3)
A 		17.5
(3)
A 		17
avr 10.5
(1.9) 		7.3
(-0.3) 		3.3
(-3) 		12.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		2.1
(-2.5)
A 		11.3
(3)
A 		3.1
(-1.9)
A 		9.5
(1.9)
A 		1.3
(-3)
A 		10
B 2.8
(0.7)
A 		2.4
(-0.1)
A 		1.8
(-1.3)
A 		1
(-3)
A 		3.9
(3)
A 		1.9
(-1.1)
A 		3
C 3.7
(3)
A 		1.7
(-0.9)
A 		0.6
(-3)
A 		1.7
(-0.9)
A 		2.4
(0.5)
A 		2.4
(0.5)
A 		3
avr 2.6
(-1.8) 		2.1
(-2.6) 		4.6
(1.8) 		1.9
(-3) 		5.3
(3) 		1.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184270_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5658
Sequence Type Exemplar sequence
Representative Public ID F54D12.7 NCBI
Target Description F54D12.7 /REP_DB=WormBase Gene ID /WP=CE17872 /TR=O44831 /GB=AAB94990.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061558
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002562 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1380996:1385386:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061558 3/11 Cross Hyb Matching Probes None
NM_001027025 8/11 Cross Hyb Matching Probes None
F54D12.9 8/11 Cross Hyb Matching Probes None
F54D12.7 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1380994-1385535(-) 81.17 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR30205 Hypothetical protein F54D12.7 [Caenorhabditis elegans] ref|NP_493959.2| F54D12.7 [Caenorhabditis elegans] 0.0
blast AAR30206 Hypothetical protein F54D12.9 [Caenorhabditis elegans] ref|NP_001022196.1| F54D12.9 [Caenorhabditis elegans] 7.0E-78
blast AAB94992 Hypothetical protein F54D12.1 [Caenorhabditis elegans] ref|NP_493963.3| F54D12.1 [Caenorhabditis elegans] 7.0E-50
Sequence
Target Sequence 
>C. ELEGANS:184270_S_AT
taatttctacacttttctacactataatattcctacagtactccgacactgttaagacct
tgcaaactaaattaacatatgaagaggaaatcatgaagaacttagttttattggctattg
tattgatttcctgttgtttcgtgactattaccgagtcaaagtgtcttgcaaacttgccag
agtcaactccggtccctggagactgtagttcgtacccgacagccaaatttctgagtcaga
aagaccaaagaataacgtattcatttcgaacaatgcctgtgtctaacgactctccctgta
ttcggggcactccaaaatgtgaggtcgctgaccccgcaacttgtggccagctctctttac
actatatcaccacttcgggagagtcgaaagcgttcgatacgctgaataatcaatcgatta
ctgaatttctcgcatgtcaaagtgacgggctctggggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTCTACACTTTTCTACACTAT 430 635 1436 Antisense
AATATTCCTACAGTACTCCGACACT 156 175 1461 Antisense
CTCCGACACTGTTAAGACCTTGCAA 255 235 1476 Antisense
GATTTCCTGTTGTTTCGTGACTATT 75 429 1560 Antisense
GCAAACTTGCCAGAGTCAACTCCGG 708 317 1603 Antisense
TCAACTCCGGTCCCTGGAGACTGTA 290 631 1618 Antisense
TAGTTCGTACCCGACAGCCAAATTT 323 641 1641 Antisense
ACAATGCCTGTGTCTAACGACTCTC 240 113 1705 Antisense
TCCCTGTATTCGGGGCACTCCAAAA 131 597 1728 Antisense
CAAAATGTGAGGTCGCTGACCCCGC 88 191 1748 Antisense
GTCAAAGTGACGGGCTCTGGGGAAC 195 461 1871 Antisense
Sequence Source Affymetrix Proprietary Database