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[184269_at]

Description C50E3.12 /REP_DB=WormBase Gene ID /WP=CE08905 /TR=Q22935 /GB=AAB04890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 57.5
(-3)
A 		80
(-1.9)
A 		129.6
(0.4)
A 		185.8
(3)
A 		128
B 73.3
(3)
A 		22.6
(-1.6)
A 		7.6
(-3)
A 		38.1
(-0.2)
A 		66
C 106.8
(2.9)
A 		17
(-2.6)
A 		9.8
(-3)
A 		108
(3)
A 		98
avr 79.2
(0.3) 		39.9
(-3) 		49
(-2.2) 		110.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 28.1
(-2.5)
A 		21.1
(-2.8)
A 		48.3
(-1.6)
A 		17.5
(-3)
A 		97.2
(0.7)
A 		145.6
(3)
A 		128
B 54.5
(-1.9)
A 		95.6
(1.3)
A 		42.2
(-2.9)
A 		40.7
(-3)
A 		101.2
(1.7)
A 		117.9
(3)
A 		77
C 81.5
(-0.2)
P 		121.9
(3)
A 		75.5
(-0.7)
A 		66.3
(-1.5)
A 		113.7
(2.3)
A 		47
(-3)
A 		75
avr 54.7
(-1.7) 		79.5
(0.6) 		55.3
(-1.7) 		41.5
(-3) 		104
(3) 		103.5
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.9
(-1.7)
A 		17.4
(-3)
A 		33.9
(3)
A 		27.2
(0.6)
A 		17
B 23.4
(3)
A 		5.6
(-1.9)
A 		1.8
(-3)
A 		8.1
(-1.3)
A 		22
C 35.4
(3)
A 		4.9
(-2.7)
A 		3.4
(-3)
A 		18.2
(-0.2)
A 		32
avr 26.6
(3) 		9.3
(-3) 		13
(-1.7) 		17.8
(-0.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.2
(-2.8)
A 		7.5
(-2.4)
A 		10.5
(-1.8)
A 		4.4
(-3)
A 		29.3
(1.8)
A 		35.4
(3)
A 		31
B 19
(-1.5)
A 		31.8
(0.8)
A 		10.3
(-3)
A 		10.8
(-2.9)
A 		41.1
(2.5)
A 		44
(3)
A 		34
C 30.2
(1.2)
P 		37.2
(3)
A 		19.2
(-1.5)
A 		13.3
(-3)
A 		36.8
(2.9)
A 		15.7
(-2.4)
A 		24
avr 18.1
(-1) 		25.5
(0.7) 		13.3
(-2.1) 		9.5
(-3) 		35.7
(3) 		31.7
(2.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11515
Sequence Type Exemplar sequence
Representative Public ID C50E3.12 NCBI
Target Description C50E3.12 /REP_DB=WormBase Gene ID /WP=CE08905 /TR=Q22935 /GB=AAB04890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072567 NCBI Caenorhabditis elegans C50E3.12 (C50E3.12) mRNA, complete cds. 11/11 None
SNAP00000028549 ENSEMBL cdna:SNAP chromosome:CEL140:V:7623248:7624621:-1 11/11 None
GENEFINDER00000028552 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7623248:7624621:-1 11/11 None
C50E3.12 ENSEMBL cdna:known chromosome:CEL140:V:7623248:7624621:-1 gene:C50E3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7623248-7624622(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.12
Entrez Gene 183663 Entrez gene
SwissProt Q22935 EMBL-EBI
WormBase CE08905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504968 C50E3.12 [Caenorhabditis elegans] gb|AAB04890.1| Hypothetical protein C50E3.12 [Caenorhabditis elegans] 0.0
blast NP_504968 C50E3.12 [Caenorhabditis elegans] gb|AAB04890.1| Hypothetical protein C50E3.12 [Caenorhabditis elegans] 1.0E-175
Sequence
Target Sequence 
>C. ELEGANS:184269_AT
tcctgctcctcctggaagtcaagagcgcaacgaaacacagggtcgttttaatcagcggct
tctagaaattagtccacgctcacgtagactaagagaaaacttagtaacctcgtataacac
agaaaacgaagctcgaacagagttcaatcaaaatctgagagaccaggccaatccaacatt
tggaaatgtcggtcgaatgttactcgctttaaacgaatcgaacaggcaacgcagtgatga
acggactcgcatatcacgagatcttcaacaaattgagcaagaagtaagagaaattgccgc
gcctcaagcggttgccaatcaacgatatcgtagggcaaatgctcctgataatctaagacg
agatcaaccatcaccagcagaagacccggaaggtctcggtgctttaatgacccccgatga
aggtgaaaatctagaagaaaatagtagtgacaactatgaggacgaagaggatgatgaata
tgctgatgatcatcaagaagggccatccaatcgaggatacaagcggccacgccgtgacag
tgacggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCTCCTCCTGGAAGTCAAGAG 574 593 558 Antisense
GGGTCGTTTTAATCAGCGGCTTCTA 197 497 597 Antisense
TAGAAATTAGTCCACGCTCACGTAG 219 653 620 Antisense
TGAGAGACCAGGCCAATCCAACATT 621 565 713 Antisense
ATGTCGGTCGAATGTTACTCGCTTT 482 47 743 Antisense
TAAGAGAAATTGCCGCGCCTCAAGC 179 637 842 Antisense
CGCCTCAAGCGGTTGCCAATCAACG 534 255 857 Antisense
GATCAACCATCACCAGCAGAAGACC 528 421 919 Antisense
GAAGACCCGGAAGGTCTCGGTGCTT 594 339 937 Antisense
CTCGGTGCTTTAATGACCCCCGATG 290 223 952 Antisense
GGCCACGCCGTGACAGTGACGGAGA 427 543 1082 Antisense
Sequence Source Affymetrix Proprietary Database