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[184268_s_at]

Description C46H11.9 /REP_DB=WormBase Gene ID /WP=CE08791 /TR=Q9GYJ2 /GB=AAF99888.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 75      6grp_total > 01      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2220
1 2 3 4 range
A 46.4
(-3)
A 		1880
(2)
P 		2266.2
(3)
P 		83.2
(-2.9)
P 		2220
B 58.7
(-3)
A 		1882.5
(2)
P 		2247.5
(3)
P 		47.9
(-3)
A 		2200
C 60.8
(-3)
A 		2030.2
(3)
P 		1843.4
(2.4)
P 		53.8
(-3)
A 		1976
avr 55.3
(-3) 		1930.9
(2.5) 		2119
(3) 		61.6
(-3) 		2064

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 950.6
(-1.2)
P 		1266.3
(3)
P 		812.5
(-3)
P 		1013.3
(-0.3)
P 		980.6
(-0.8)
P 		900.6
(-1.8)
P 		454
B 819.3
(-0.6)
P 		1068.5
(3)
P 		649.7
(-3)
P 		747.5
(-1.6)
P 		975.4
(1.7)
P 		812.1
(-0.7)
P 		419
C 811.4
(-3)
P 		1013.3
(0.5)
P 		887
(-1.7)
P 		810.1
(-3)
P 		1161.6
(3)
P 		814.1
(-2.9)
P 		352
avr 860.4
(-1.6) 		1116
(3) 		783.1
(-3) 		857
(-1.7) 		1039.2
(1.6) 		842.3
(-1.9) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 633
1 2 3 4 range
A 16.9
(-3)
A 		408.1
(1.1)
P 		592.4
(3)
P 		12.2
(-3)
P 		580
B 18.7
(-2.9)
A 		464.9
(2.3)
P 		520.8
(3)
P 		10.2
(-3)
A 		511
C 20.1
(-2.9)
A 		583.7
(2.4)
P 		642.5
(3)
P 		9.1
(-3)
A 		633
avr 18.6
(-2.9) 		485.6
(2) 		585.2
(3) 		10.5
(-3) 		575

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 175.2
(-3)
P 		450.3
(3)
P 		177
(-3)
P 		257
(-1.2)
P 		295.9
(-0.4)
P 		219.3
(-2)
P 		275
B 285.1
(0.2)
P 		355.6
(2)
P 		157.8
(-3)
P 		198
(-2)
P 		396.3
(3)
P 		302.8
(0.6)
P 		239
C 300.8
(0.9)
P 		309.2
(1.1)
P 		225.8
(-1.2)
P 		162.9
(-3)
P 		375.9
(3)
P 		272.5
(0.1)
P 		213
avr 253.7
(-0.8) 		371.7
(3) 		186.9
(-3) 		206
(-2.4) 		356
(2.5) 		264.9
(-0.5) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184268_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1831
Sequence Type Exemplar sequence
Representative Public ID C46H11.9 NCBI
Target Description C46H11.9 /REP_DB=WormBase Gene ID /WP=CE08791 /TR=Q9GYJ2 /GB=AAF99888.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059108 NCBI Caenorhabditis elegans C46H11.9 (C46H11.9) mRNA, complete cds. 11/11 None
SNAP00000043107 ENSEMBL cdna:SNAP chromosome:CEL140:I:5046481:5047993:-1 11/11 None
GENEFINDER00000043156 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5046481:5047993:-1 11/11 None
C46H11.9 ENSEMBL cdna:known chromosome:CEL140:I:5046467:5047993:-1 gene:C46H11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5046480-5047993(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.9
Entrez Gene 172130 Entrez gene
SwissProt Q9GYJ2 EMBL-EBI
WormBase CE08791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99888 Hypothetical protein C46H11.9 [Caenorhabditis elegans] ref|NP_491509.1| C46H11.9 [Caenorhabditis elegans] 1.0E-115
blast CAE65719 Hypothetical protein CBG10799 [Caenorhabditis briggsae] 1.0E-80
blast AAF99887 Hypothetical protein C46H11.8 [Caenorhabditis elegans] ref|NP_491508.2| C46H11.8 [Caenorhabditis elegans] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.4E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-18
Sequence
Target Sequence 
>C. ELEGANS:184268_S_AT
aagttgctgtctcaatgcggatctcatcaccactgtggttccatctaacgttgtcaccga
cgcttcgggatccactgtgactgttgccacgactatccgtagtggatccactgtcacttc
ccgcacttcatctggaacaggatgcgttgatcgtgtcaattcagctacaggaacttctga
ttgtgctaatagaagagctctctgcaacgatgccaactactttgacgtcatgactcaaca
atgtccaaagacttgcggaagatgctcatcattctctagcacacctacaactggtacatg
cactgacttgaagaacccaaagacgggaacttcggactgcgcaagcctgcgttctttctg
taatgattccaactacattgatctgatgagaactcaatgcccaagaacttgtggattctg
tggaagttccggttcatcttctaccactagatccagcgcaactgtttcttccggaacatg
tgtcgacagagtcaacccagccaccggaagatctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGCTGTCTCAATGCGGATCTC 34 157 150 Antisense
TCACCACTGTGGTTCCATCTAACGT 212 625 176 Antisense
TTCGGGATCCACTGTGACTGTTGCC 393 693 213 Antisense
CGTAGTGGATCCACTGTCACTTCCC 320 245 247 Antisense
ACGATGCCAACTACTTTGACGTCAT 669 93 356 Antisense
AGATGCTCATCATTCTCTAGCACAC 301 67 409 Antisense
AGCCTGCGTTCTTTCTGTAATGATT 570 83 493 Antisense
TGGAAGTTCCGGTTCATCTTCTACC 304 547 570 Antisense
TAGATCCAGCGCAACTGTTTCTTCC 542 653 597 Antisense
TGTGTCGACAGAGTCAACCCAGCCA 390 555 628 Antisense
AACCCAGCCACCGGAAGATCTGATT 638 145 643 Antisense
Sequence Source Affymetrix Proprietary Database