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[184267_at]

Description Y60A3A.15 /REP_DB=WormBase Gene ID /WP=CE24521 /TR=Q9U1Z1 /GB=CAB60400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.5
(-3)
A 		5.8
(-2)
A 		5.3
(-2.2)
A 		16.8
(3)
A 		13
B 9.6
(3)
A 		4
(-3)
A 		5.4
(-1.5)
A 		4.1
(-2.9)
A 		6
C 4.7
(-2.6)
A 		3.7
(-3)
A 		8.7
(-0.9)
A 		18
(3)
A 		14
avr 5.9
(-2) 		4.5
(-3) 		6.5
(-1.6) 		13
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.6
(-0.1)
A 		9
(0.9)
A 		9.4
(1.2)
A 		3.4
(-3)
A 		12
(3)
A 		8.9
(0.8)
A 		9
B 8.5
(-0.9)
A 		7.3
(-2.4)
A 		11.7
(3)
A 		6.8
(-3)
A 		7.9
(-1.7)
A 		9
(-0.3)
A 		5
C 4.8
(-2)
A 		12.6
(3)
A 		3.4
(-2.9)
A 		9.5
(1)
A 		9.2
(0.8)
A 		3.2
(-3)
A 		9
avr 7
(-2.2) 		9.6
(2.8) 		8.2
(0.1) 		6.6
(-3) 		9.7
(3) 		7
(-2.2) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-3)
A 		1.3
(-3)
A 		1.4
(-2.5)
A 		2.5
(3)
A 		1
B 3.1
(3)
A 		1
(-2.7)
A 		1.3
(-1.9)
A 		0.9
(-3)
A 		2
C 1.5
(-1.7)
A 		1.1
(-3)
A 		3
(3)
A 		3
(3)
A 		2
avr 2
(2.4) 		1.1
(-3) 		1.9
(1.8) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.4
(-1.9)
A 		3.2
(2.1)
A 		2.1
(-0.3)
A 		0.9
(-3)
A 		3.6
(3)
A 		2.2
(-0.1)
A 		3
B 3
(1.5)
A 		2.4
(-0.8)
A 		2.8
(0.8)
A 		1.8
(-3)
A 		3.2
(2.3)
A 		3.4
(3)
A 		2
C 1.8
(-1.1)
A 		3.8
(3)
A 		0.9
(-3)
A 		1.9
(-0.9)
A 		3
(1.3)
A 		1.1
(-2.6)
A 		3
avr 2.1
(-1) 		3.1
(2.3) 		1.9
(-1.7) 		1.5
(-3) 		3.3
(3) 		2.2
(-0.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13610
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.15 NCBI
Target Description Y60A3A.15 /REP_DB=WormBase Gene ID /WP=CE24521 /TR=Q9U1Z1 /GB=CAB60400.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075457 NCBI Caenorhabditis elegans Y60A3A.15 (Y60A3A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000032841 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19923405:19924802:-1 11/11 None
Y60A3A.15 ENSEMBL cdna:known chromosome:CEL140:V:19923405:19924802:-1 gene:Y60A3A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032797 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19923404-19924802(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-240
Ensembl Y60A3A.15
Entrez Gene 190437 Entrez gene
SwissProt Q9U1Z1 EMBL-EBI
WormBase CE24521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 1.0E-140
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 1.0E-121
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 4.0E-89
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 2.0E-87
blast T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans 1.0E-28
blast T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:184267_AT
gtcgagttgcccacatttcaagagtattctaaagctcttctacctgctcactctgatggt
attagtttccaacacggacatgttgaacaagaaattgacacaagctccgtgctagctcat
ctgaaaaccgctctccagtgggtgcaacagttttcgctctttgcagtgctctctgatgtt
gaaaagagtcagatcatcttgaccaagtggccacatcttttgtgcctcgcattgtttgaa
aacgccgaaaaaatcttcatcgatgaaaaatttgcgcaactggctgaaaaattcaatgtc
ctcaaagtttcggcgcaggattatttccttttgaagggaatcatgattttcacggaaagt
cagtttaacaccaataatggtgcagacctcaaatttgatcgtcaacttgatatctgtatc
ggccttctcaatcagttgcactcggagtcttcaaagtcgaaatccggcagacttatcttt
cttctcggcgagcttaagtcctattctactagacagcttgaatctctcctagatctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAGTTGCCCACATTTCAAGAGT 571 473 202 Antisense
ATTCTAAAGCTCTTCTACCTGCTCA 228 11 227 Antisense
CTCCGTGCTAGCTCATCTGAAAACC 99 235 306 Antisense
TCATCTGAAAACCGCTCTCCAGTGG 335 621 318 Antisense
CTCTTTGCAGTGCTCTCTGATGTTG 48 231 358 Antisense
CATCTTGACCAAGTGGCCACATCTT 249 213 396 Antisense
GTGCCTCGCATTGTTTGAAAACGCC 175 479 423 Antisense
CAATGTCCTCAAAGTTTCGGCGCAG 175 183 495 Antisense
AATCCGGCAGACTTATCTTTCTTCT 688 167 662 Antisense
TCTTCTCGGCGAGCTTAAGTCCTAT 665 613 681 Antisense
GCTTGAATCTCTCCTAGATCTCAAA 369 307 717 Antisense
Sequence Source Affymetrix Proprietary Database