[Home] | [Total List]

[184265_at]

Description R13D11.4 /REP_DB=WormBase Gene ID /WP=CE12788 /TR=O17014 /GB=AAB69944.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      4grp_high_8_8 > 13      6grp_total > 46      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 192.9
(-1.5)
P 		170.6
(-1.8)
A 		60.9
(-3)
A 		607
(3)
P 		546
B 215.7
(-2.3)
P 		219.5
(-2.3)
P 		140.6
(-3)
P 		832.3
(3)
P 		692
C 211.9
(-2.4)
P 		220.3
(-2.3)
P 		151.3
(-3)
A 		723.6
(3)
P 		572
avr 206.8
(-2.1) 		203.5
(-2.1) 		117.6
(-3) 		721
(3) 		603

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 260.3
(2.7)
P 		208.7
(0.4)
P 		224.7
(1.1)
P 		131
(-3)
A 		142.4
(-2.5)
P 		266.6
(3)
P 		136
B 196.7
(1.7)
P 		210.6
(3)
P 		182.1
(0.4)
A 		209.7
(2.9)
A 		144
(-3)
A 		206.3
(2.6)
P 		67
C 214.7
(1.1)
P 		239.3
(1.8)
P 		196.9
(0.5)
A 		260.1
(2.5)
P 		79.5
(-3)
M 		278.1
(3)
P 		199
avr 223.9
(1.8) 		219.5
(1.6) 		201.2
(0.7) 		200.3
(0.7) 		122
(-3) 		250.3
(3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 70.2
(1.5)
P 		37
(-1.3)
A 		15.9
(-3)
A 		88.9
(3)
P 		73
B 68.8
(-1.5)
P 		54.2
(-2.1)
P 		32.6
(-3)
P 		177.4
(3)
P 		145
C 70.1
(-1.5)
P 		63.3
(-2.1)
P 		52.7
(-3)
A 		122
(3)
P 		69
avr 69.7
(-0.7) 		51.5
(-1.9) 		33.7
(-3) 		129.4
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 48
(-0.8)
P 		74.2
(3)
P 		48.9
(-0.7)
P 		33.2
(-3)
A 		43
(-1.6)
P 		64.9
(1.6)
P 		41
B 68.4
(1.4)
P 		70.1
(1.8)
P 		44.2
(-3)
A 		55.6
(-0.9)
A 		58.5
(-0.4)
A 		76.9
(3)
P 		33
C 79.6
(1.8)
P 		73
(1.2)
P 		50.1
(-0.8)
A 		52.3
(-0.6)
P 		25.7
(-3)
M 		93.1
(3)
P 		67
avr 65.3
(0.8) 		72.4
(2) 		47.7
(-2.1) 		47
(-2.2) 		42.4
(-3) 		78.3
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14878
Sequence Type Exemplar sequence
Representative Public ID R13D11.4 NCBI
Target Description R13D11.4 /REP_DB=WormBase Gene ID /WP=CE12788 /TR=O17014 /GB=AAB69944.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070928 NCBI Caenorhabditis elegans R13D11.4 (R13D11.4) mRNA, complete cds. 11/11 None
R13D11.4 ENSEMBL cdna:known chromosome:CEL140:V:809295:811477:1 gene:R13D11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031831 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031842 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:809294-811477(+) 93.81 100.0
Public Domain and Genome References
Gene Title
Ensembl R13D11.4
Entrez Gene 187863 Entrez gene
SwissProt O17014 EMBL-EBI
WormBase CE12788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503329 R13D11.4 [Caenorhabditis elegans] gb|AAB69944.1| Hypothetical protein R13D11.4 [Caenorhabditis elegans] 0.0
blast AAB65282 Hypothetical protein F17A9.5 [Caenorhabditis elegans] ref|NP_504579.1| F17A9.5 [Caenorhabditis elegans] 9.0E-60
blast AAC19231 Hypothetical protein T10B5.8 [Caenorhabditis elegans] ref|NP_503516.1| T10B5.8 [Caenorhabditis elegans] 5.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503329.1 2 176-195,208-230
R13D11.4 2 176-195,208-230
Sequence
Target Sequence 
>C. ELEGANS:184265_AT
tctcactgagccgaggcccagtagactccaaaatataaatataacatctgtttgcctttc
tccattttttcctatttttttctcgcttcttttcgtatgtccatttttattccacacgca
cattcgtgttgctcaaggagcctgttttccagacgctgattttcttaaaatgtcggagga
taactacgaatttgtgcaactcaccaatgagaattcatcagagctctcggaatttttgat
gagccattttttgctcgaagagcctatgaacagagcaatcggcatgagcagagagaattt
tcaaccgttcgtggacaaacttttcgagaggacattgaacattcccttctcatttgctct
cgtggagaaggattcacgaaaattcgccgcgtgcgccatgtcttctctatggataaacga
gaaaaacgatgttgcacacaaagacactgaaaaccatggcgacgagttcacttttggaaa
tccggaacgaaaggacatcgcagctgtcggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCACTGAGCCGAGGCCCAGTAGA 668 611 594 Antisense
TATAACATCTGTTTGCCTTTCTCCA 127 661 633 Antisense
TCGCTTCTTTTCGTATGTCCATTTT 185 601 676 Antisense
GTATGTCCATTTTTATTCCACACGC 685 455 688 Antisense
GCTCAAGGAGCCTGTTTTCCAGACG 329 301 724 Antisense
GAGAATTTTCAACCGTTCGTGGACA 341 391 886 Antisense
AGGACATTGAACATTCCCTTCTCAT 160 53 922 Antisense
TTCACGAAAATTCGCCGCGTGCGCC 540 685 966 Antisense
TGCGCCATGTCTTCTCTATGGATAA 337 583 985 Antisense
AACCATGGCGACGAGTTCACTTTTG 164 139 1045 Antisense
GAAAGGACATCGCAGCTGTCGGAAA 379 361 1082 Antisense
Sequence Source Affymetrix Proprietary Database