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[184264_at]

Description Y17G7B.19 /REP_DB=WormBase Gene ID /WP=CE19054 /TR=Q9XXH5 /GB=CAA19467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 40.7
(-3)
A 		73.9
(0.3)
A 		101
(3)
A 		52
(-1.9)
A 		60
B 107.1
(2.2)
A 		115.3
(3)
A 		52.1
(-3)
A 		69.9
(-1.3)
A 		63
C 71.5
(-1.6)
A 		71.8
(-1.6)
A 		61.2
(-3)
A 		106.2
(3)
A 		45
avr 73.1
(-2.3) 		87
(3) 		71.4
(-3) 		76
(-1.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 100.4
(3)
A 		47.7
(-3)
A 		64.8
(-1.1)
A 		68.8
(-0.6)
A 		56.1
(-2)
A 		56.6
(-2)
A 		53
B 44.8
(-3)
A 		53.4
(-2)
A 		84.9
(1.8)
P 		95.2
(3)
A 		80
(1.2)
A 		50.8
(-2.3)
A 		50
C 46.4
(-0)
A 		73.6
(3)
A 		19.4
(-3)
A 		26
(-2.3)
A 		20.8
(-2.8)
A 		38
(-0.9)
A 		54
avr 63.9
(3) 		58.2
(0.8) 		56.4
(0.1) 		63.3
(2.8) 		52.3
(-1.5) 		48.5
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 14.8
(-0.7)
A 		16
(-0.3)
A 		26.4
(3)
A 		7.6
(-3)
A 		19
B 34.2
(3)
A 		28.5
(1.5)
A 		12.1
(-3)
A 		14.9
(-2.2)
A 		22
C 23.7
(3)
A 		20.6
(-0.2)
A 		21.3
(0.5)
A 		17.9
(-3)
A 		6
avr 24.2
(3) 		21.7
(1.6) 		19.9
(0.6) 		13.5
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.5
(3)
A 		17
(1.1)
A 		14.1
(-2.6)
A 		17.4
(1.6)
A 		16.9
(1)
A 		13.8
(-3)
A 		5
B 15.6
(-3)
A 		17.8
(-2.2)
A 		20.6
(-1.2)
P 		25.2
(0.4)
A 		32.5
(3)
A 		19
(-1.8)
A 		17
C 17.2
(1.2)
A 		22.5
(3)
A 		4.9
(-3)
A 		5.2
(-2.9)
A 		6.7
(-2.4)
A 		12.7
(-0.3)
A 		18
avr 17.1
(1) 		19.1
(3) 		13.2
(-3) 		15.9
(-0.3) 		18.7
(2.6) 		15.2
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3387
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.19 NCBI
Target Description Y17G7B.19 /REP_DB=WormBase Gene ID /WP=CE19054 /TR=Q9XXH5 /GB=CAA19467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064173
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064173 NCBI Caenorhabditis elegans Y17G7B.19 (Y17G7B.19) mRNA, complete cds. None
Y17G7B.19 ENSEMBL cdna:known chromosome:CEL140:II:12108454:12110032:-1 gene:Y17G7B.19 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12108450-12110029(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.19
Entrez Gene 189458 Entrez gene
SwissProt Q9XXH5 EMBL-EBI
WormBase CE35651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19467 Hypothetical protein Y17G7B.19 [Caenorhabditis elegans] ref|NP_496574.2| Y17G7B.19 [Caenorhabditis elegans] 1.0E-172
blast CAE67232 Hypothetical protein CBG12671 [Caenorhabditis briggsae] 2.0E-22
blast CAE67234 Hypothetical protein CBG12673 [Caenorhabditis briggsae] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 5.1E-8
Sequence
Target Sequence 
>C. ELEGANS:184264_AT
cgatttgctcgacaggtggaacaccgttcgaagttgagctctccgacgggccatgctcga
atcatatcgattgtaaccccgacgagctaccgtttaagtggaatgcctactgtagtcaga
atgcgaagagcaatatgtgttgtagaggtaaccccttgcccgtcgctgattggtttgaaa
tccggacacgccgaccaatgagcatatcagcctattccccgtacctctcgctgattgata
ccctagttgattccctgtgcccggacggcttcactccataccgtactcaacaaaaatgcg
aaggctaccacccgttgagcaaatcatccggaaaatgtccgaagagcaatggaatgtgcc
accgcggtcattgttgtcccaggttgacaatcgacgaggcgagaaaagcgactccctacc
acctgaactacgtcacagatacccaatgtgacccaacggagccactggatttcgtgtatc
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTTGCTCGACAGGTGGAACACC 696 245 332 Antisense
ACCGTTCGAAGTTGAGCTCTCCGAC 148 89 354 Antisense
TATCGATTGTAACCCCGACGAGCTA 408 649 396 Antisense
TTGCCCGTCGCTGATTGGTTTGAAA 495 701 487 Antisense
TTGAAATCCGGACACGCCGACCAAT 624 653 506 Antisense
CAATGAGCATATCAGCCTATTCCCC 177 183 527 Antisense
ATTGATACCCTAGTTGATTCCCTGT 136 5 565 Antisense
TTCACTCCATACCGTACTCAACAAA 184 687 601 Antisense
GCTACCACCCGTTGAGCAAATCATC 204 303 635 Antisense
CAGATACCCAATGTGACCCAACGGA 3 203 767 Antisense
GGAGCCACTGGATTTCGTGTATCGC 119 523 789 Antisense
Sequence Source Affymetrix Proprietary Database