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[184263_at]

Description F49D11.2 /REP_DB=WormBase Gene ID /WP=CE17076 /TR=O44725 /GB=AAB96708.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 46.7
(3)
P 		24
(-0.5)
A 		7.6
(-3)
A 		26.4
(-0.1)
A 		39
B 51.9
(0.5)
A 		10.8
(-2.7)
A 		7.1
(-3)
A 		84.3
(3)
A 		77
C 72.7
(-0.2)
M 		35.6
(-2.1)
A 		17.4
(-3)
A 		134.9
(3)
A 		118
avr 57.1
(0.9) 		23.5
(-1.9) 		10.7
(-3) 		81.9
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 12.9
(-1.9)
A 		31.1
(0.1)
A 		57.8
(3)
M 		6.3
(-2.6)
A 		2.7
(-3)
A 		2.9
(-3)
A 		55
B 35.7
(-0.2)
A 		35.5
(-0.2)
A 		67.8
(3)
A 		6.9
(-3)
A 		26.2
(-1.1)
A 		26.9
(-1)
A 		61
C 45.3
(1.1)
A 		47
(1.3)
A 		63.7
(3)
A 		10.4
(-2.5)
A 		5.6
(-3)
A 		29.1
(-0.6)
A 		58
avr 31.3
(-0.5) 		37.9
(0.3) 		63.1
(3) 		7.9
(-3) 		11.5
(-2.6) 		19.6
(-1.7) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17
(3)
P 		5.2
(-1.7)
A 		2
(-3)
A 		3.9
(-2.2)
A 		15
B 16.5
(2.4)
A 		2.7
(-2.6)
A 		1.7
(-3)
A 		18
(3)
A 		16
C 24.1
(3)
M 		10.2
(-1.6)
A 		6.1
(-3)
A 		22.8
(2.6)
A 		18
avr 19.2
(3) 		6
(-2) 		3.3
(-3) 		14.9
(1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.4
(-2.1)
A 		11.1
(2.2)
A 		12.6
(3)
M 		1.6
(-2.5)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		12
B 12.4
(1.3)
A 		11.8
(1.1)
A 		16.5
(3)
A 		1.8
(-3)
A 		10.6
(0.6)
A 		10
(0.3)
A 		15
C 16.8
(3)
A 		14.3
(2)
A 		16.2
(2.8)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		9.7
(0.2)
A 		15
avr 10.5
(0.9) 		12.4
(1.8) 		15.1
(3) 		1.8
(-3) 		4.4
(-1.8) 		6.8
(-0.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2190
Sequence Type Exemplar sequence
Representative Public ID F49D11.2 NCBI
Target Description F49D11.2 /REP_DB=WormBase Gene ID /WP=CE17076 /TR=O44725 /GB=AAB96708.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060446 NCBI Caenorhabditis elegans F49D11.2 (F49D11.2) mRNA, complete cds. 11/11 None
SNAP00000015040 ENSEMBL cdna:SNAP chromosome:CEL140:I:10929541:10931609:1 11/11 None
GENEFINDER00000015061 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10929541:10931609:1 11/11 None
F49D11.2 ENSEMBL cdna:known chromosome:CEL140:I:10929541:10931609:1 gene:F49D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10929471-10931540(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49D11.2
Entrez Gene 186031 Entrez gene
SwissProt O44725 EMBL-EBI
WormBase CE17076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96708 Hypothetical protein F49D11.2 [Caenorhabditis elegans] ref|NP_492847.1| F49D11.2 [Caenorhabditis elegans] 0.0
blast CAE63867 Hypothetical protein CBG08432 [Caenorhabditis briggsae] 5.0E-97
blast CAE63867 Hypothetical protein CBG08432 [Caenorhabditis briggsae] 3.0E-87
blast CAD56598 Hypothetical protein T05F1.13 [Caenorhabditis elegans] ref|NP_871891.1| T05F1.13 [Caenorhabditis elegans] 2.0E-14
blast CAD56598 Hypothetical protein T05F1.13 [Caenorhabditis elegans] ref|NP_871891.1| T05F1.13 [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:184263_AT
caatcggggatcgtgtctggcaatgggagttcgagaaagagagtttgtggaggatgcaca
caagattttggaaatgatggagagtctgaagaatttgaaattggatatcagtttgcgaaa
ggtcgagtttttcagtccaaagatgtgcaacatcgatcacctaagcattacctaccacaa
aaaccaaatttccgaaaagaatctgctgagcttgaactgtgaaacaatcaaactttggtc
tgtaactacatcctcccgatctctgaataaattcatcaagaagtggctcttcactttcga
tacgcgatttcagtatttggaaattccaatcctgcatttaatagaggaggattcgaatcc
atggaatattttcaaggatttggaaatttcagcgttcgacgaagggaagagagccgagta
ttataagagatatgattgggattttgaaacaaactgcctcggctcccatcgtttcataaa
ttgccaacgaggaaccgatatcgaacgggaagatggaatgttggctacaattatcacaga
ttctacatttttctactttttcgtttggcacaatcgattcccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCGGGGATCGTGTCTGGCAATG 616 179 687 Antisense
AGGTCGAGTTTTTCAGTCCAAAGAT 64 41 806 Antisense
GCAACATCGATCACCTAAGCATTAC 18 617 833 Antisense
TAAGCATTACCTACCACAAAAACCA 324 629 848 Antisense
ATCTGCTGAGCTTGAACTGTGAAAC 492 33 887 Antisense
ACTTTGGTCTGTAACTACATCCTCC 586 101 918 Antisense
GAAGTGGCTCTTCACTTTCGATACG 415 335 966 Antisense
TCGGCTCCCATCGTTTCATAAATTG 379 607 1145 Antisense
CACAGATTCTACATTTTTCTACTTT 57 197 1221 Antisense
TTTCTACTTTTTCGTTTGGCACAAT 532 671 1236 Antisense
TCGTTTGGCACAATCGATTCCCGGA 698 603 1247 Antisense
Sequence Source Affymetrix Proprietary Database