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[184262_at]

Description Y53C10A.7 /REP_DB=WormBase Gene ID /WP=CE22375 /TR=Q9XW48 /GB=CAA22143.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 73      6grp_total > 65      4grp_total > 07      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 100.2
(2.9)
P 		28.9
(-3)
A 		90.3
(2.1)
A 		101.8
(3)
A 		73
B 60.9
(-1.7)
P 		50.6
(-3)
A 		96.4
(3)
P 		67.9
(-0.7)
A 		46
C 115.5
(2.3)
P 		52.4
(-2.9)
A 		51.3
(-3)
M 		124.3
(3)
P 		73
avr 92.2
(2.4) 		44
(-3) 		79.3
(0.9) 		98
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 39.1
(-3)
A 		76.4
(0.8)
P 		72.9
(0.5)
P 		97.3
(3)
P 		60.5
(-0.8)
A 		85.6
(1.8)
P 		58
B 74
(-1.4)
P 		82.8
(-0.5)
A 		102.6
(1.4)
P 		57
(-3)
A 		76.2
(-1.2)
P 		119.6
(3)
P 		63
C 87
(-2.7)
P 		107.7
(0.9)
M 		103.5
(0.1)
P 		119.9
(3)
P 		85.5
(-3)
A 		92.4
(-1.8)
P 		34
avr 66.7
(-3) 		89
(1.1) 		93
(1.9) 		91.4
(1.6) 		74.1
(-1.6) 		99.2
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 36.5
(3)
P 		6.3
(-3)
A 		23.6
(0.4)
A 		14.9
(-1.3)
A 		30
B 19.4
(1.2)
P 		12.5
(-3)
A 		22.3
(3)
P 		14.5
(-1.8)
A 		10
C 38.2
(3)
P 		15.1
(-3)
A 		17.9
(-2.3)
M 		21
(-1.5)
P 		23
avr 31.4
(3) 		11.3
(-3) 		21.3
(-0) 		16.8
(-1.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.2
(-3)
A 		27.2
(3)
P 		15.9
(-0.4)
P 		24.7
(2.3)
P 		18.3
(0.3)
A 		20.8
(1.1)
P 		20
B 25.7
(-0.8)
P 		27.6
(-0.5)
A 		24.9
(-1)
P 		15.1
(-3)
A 		31
(0.2)
P 		44.6
(3)
P 		30
C 32.3
(2.6)
P 		32.9
(3)
M 		26.3
(-1.5)
P 		24.1
(-3)
P 		27.7
(-0.5)
A 		30.9
(1.6)
P 		9
avr 21.7
(-2.8) 		29.2
(1.4) 		22.4
(-2.4) 		21.3
(-3) 		25.7
(-0.6) 		32.1
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2186
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.7 NCBI
Target Description Y53C10A.7 /REP_DB=WormBase Gene ID /WP=CE22375 /TR=Q9XW48 /GB=CAA22143.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000686 ENSEMBL cdna:SNAP chromosome:CEL140:I:12013618:12014418:1 11/11 None
GENEFINDER00000000704 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12013693:12014418:1 11/11 None
Y53C10A.7 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12013299:12014418:1 gene:Y53C10A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12013229-12014349(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53C10A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 1.0E-119
blast AAC17650 Hypothetical protein B0511.3 [Caenorhabditis elegans] ref|NP_492787.1| B0511.3 [Caenorhabditis elegans] 1.0E-32
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 4.0E-15
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-46
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-46
Sequence
Target Sequence 
>C. ELEGANS:184262_AT
gtattgagccgtgttcaggacatggtagatatgctcagctcatccaaatttccgaatgtc
aaaatcattcatttctttaaaatttcgtcttctcaaatagctcaaattattccgagcttc
aaggctggaaatctggaagagctacatctcaacacatctgataaaccgacagctcaagat
gttgaaaaaatctgcaattcagatcagtggaaacatgcaaaagagtttgacggaaattgt
gattttacggatgttcctatcaaacatctcagtcacttctctcgtgttcgtgccccttat
gaaaaaatttccgtggataccgctgttgaaattagaaatgttttgctgtcgtctggtaac
atcgagcgtgcaatgttcttatcgaaaagtgacttcggcgtcgatgttgttcgcgttttt
gatccggaagcagcctatgtgaacaaaaatacgattttccatgatggtgctggcgttttc
attcaagtccctgccgatgtggaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTGAGCCGTGTTCAGGACATGG 583 451 295 Antisense
GATATGCTCAGCTCATCCAAATTTC 674 425 322 Antisense
GAGCTACATCTCAACACATCTGATA 29 389 433 Antisense
ATCAAACATCTCAGTCACTTCTCTC 446 27 553 Antisense
ATTTCCGTGGATACCGCTGTTGAAA 470 15 601 Antisense
GTTTTGCTGTCGTCTGGTAACATCG 200 449 634 Antisense
TGACTTCGGCGTCGATGTTGTTCGC 93 571 684 Antisense
TGTTCGCGTTTTTGATCCGGAAGCA 160 559 702 Antisense
GATCCGGAAGCAGCCTATGTGAACA 660 415 715 Antisense
TGCTGGCGTTTTCATTCAAGTCCCT 199 583 762 Antisense
TCAAGTCCCTGCCGATGTGGACCGA 580 631 777 Antisense
Sequence Source Affymetrix Proprietary Database