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[184261_at]

Description C16C8.14 /REP_DB=WormBase Gene ID /WP=CE08225 /TR=P91053 /GB=AAB37856.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 10.2
(-2.5)
A 		33.9
(-0)
A 		5
(-3)
A 		63.3
(3)
A 		58
B 30.9
(-1.6)
A 		5.8
(-3)
A 		8.2
(-2.9)
A 		111.1
(3)
A 		105
C 4.4
(-3)
A 		7.4
(-2.8)
A 		3.6
(-3)
A 		155.4
(3)
A 		152
avr 15.2
(-2.4) 		15.7
(-2.4) 		5.6
(-3) 		109.9
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 10.1
(-3)
A 		34.1
(-2)
A 		45.6
(-1.6)
A 		61.3
(-1)
A 		91.2
(0.2)
A 		160.5
(3)
A 		150
B 28.8
(-1.9)
A 		6.9
(-3)
A 		18.9
(-2.4)
A 		43.6
(-1.1)
A 		106.5
(2.1)
A 		124.4
(3)
M 		118
C 7.9
(-3)
A 		13.3
(-2.8)
A 		18.9
(-2.6)
A 		25.1
(-2.4)
A 		70.8
(-0.8)
A 		183.3
(3)
P 		175
avr 15.6
(-3) 		18.1
(-2.9) 		27.8
(-2.5) 		43.3
(-1.8) 		89.5
(0.2) 		156.1
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.7
(-1.2)
A 		7.4
(1.6)
A 		1.3
(-3)
A 		9.3
(3)
A 		8
B 9.8
(-0.7)
A 		1.4
(-3)
A 		1.9
(-2.9)
A 		23.7
(3)
A 		22
C 1.5
(-2.9)
A 		2.1
(-2.8)
A 		1.2
(-3)
A 		26.2
(3)
A 		25
avr 5
(-1.8) 		3.6
(-2.3) 		1.5
(-3) 		19.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 1.9
(-3)
A 		12.1
(-1.4)
A 		9.9
(-1.7)
A 		15.6
(-0.8)
A 		27.5
(1.1)
A 		39.1
(3)
A 		37
B 10
(-2)
A 		2.3
(-3)
A 		4.6
(-2.7)
A 		11.5
(-1.7)
A 		43.3
(2.6)
A 		46.4
(3)
M 		44
C 2.9
(-3)
A 		4.1
(-2.9)
A 		4.8
(-2.8)
A 		5.1
(-2.8)
A 		22.9
(-0.9)
A 		61.4
(3)
P 		59
avr 4.9
(-3) 		6.2
(-2.8) 		6.4
(-2.8) 		10.7
(-2.2) 		31.2
(0.6) 		49
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4655
Sequence Type Exemplar sequence
Representative Public ID C16C8.14 NCBI
Target Description C16C8.14 /REP_DB=WormBase Gene ID /WP=CE08225 /TR=P91053 /GB=AAB37856.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062144 NCBI Caenorhabditis elegans C16C8.14 (C16C8.14) mRNA, complete cds. 11/11 None
SNAP00000014780 ENSEMBL cdna:SNAP chromosome:CEL140:II:3449225:3450872:1 10/11 None
GENEFINDER00000014804 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3450185:3450979:1 11/11 None
C16C8.14 ENSEMBL cdna:known chromosome:CEL140:II:3449248:3450989:1 gene:C16C8.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3450183-3450978(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.14
Entrez Gene 173689 Entrez gene
SwissProt P91053 EMBL-EBI
WormBase CE08225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 1.0E-131
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 6.0E-99
blast AAB37855 Hypothetical protein C16C8.13 [Caenorhabditis elegans] ref|NP_494546.1| C16C8.13 [Caenorhabditis elegans] 2.0E-66
blast T29401 hypothetical protein C16C8.15 - Caenorhabditis elegans 2.0E-65
blast AAB37858 Hypothetical protein C16C8.16 [Caenorhabditis elegans] ref|NP_494544.1| C16C8.16 [Caenorhabditis elegans] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 5.0E-8
Pfam IPR000626 EMBL-EBI Ubiquitin 7.8E-19
Sequence
Target Sequence 
>C. ELEGANS:184261_AT
gaacactcaggaaatttgccaacagattttaaagaaacaaggcaaatctcaaaaatccca
ggaaaatcaaaacgcgtttatcgaaaatttgatgtcggaattgaagactgccaaatcaaa
gctaaatgagaccgaaaatcaaataagtgacctgcatgaagcaacgaagcaacaggagtc
tcaggcaaatttgtggaatgatcttgttgccaagatttcggataaaaatctggaaatgat
gctgaaaattcaaaaaagtcaggatctgatgattatgaagatgcaggaaggatcagctgt
gcaagacgtcccaattgaaactgaaaaatcggcaaagaatggcccattttttgagatttt
ggtcatctggaccgactcgcgtggcccagtagttcctgggaaccatgggaagcttcgggt
gtgcggatcggatacaattcgacagataaaaccgcgcatcaattcacttgcaggaataga
taccatctcgttcagaacgttctgtgatgataaatttctcgaagacgaccacactctcgc
ccactacaacattcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACTCAGGAAATTTGCCAACAG 628 349 126 Antisense
AGGCAAATCTCAAAAATCCCAGGAA 653 53 165 Antisense
GTGACCTGCATGAAGCAACGAAGCA 184 481 272 Antisense
CAGGAGTCTCAGGCAAATTTGTGGA 112 209 298 Antisense
AAATCGGCAAAGAATGGCCCATTTT 560 117 451 Antisense
TTTTGGTCATCTGGACCGACTCGCG 609 661 482 Antisense
TCGCGTGGCCCAGTAGTTCCTGGGA 681 597 502 Antisense
ATGGGAAGCTTCGGGTGTGCGGATC 38 49 530 Antisense
AGATAAAACCGCGCATCAATTCACT 99 63 569 Antisense
ATAGATACCATCTCGTTCAGAACGT 109 23 601 Antisense
TCTCGCCCACTACAACATTCGAGAA 39 611 660 Antisense
Sequence Source Affymetrix Proprietary Database