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[184260_s_at]

Description C15B12.4 /REP_DB=WormBase Gene ID /WP=CE27064 /TR=Q18005 /GB=AAK39164.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 45      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 213.8
(-1)
P 		118.1
(-2.7)
P 		100.6
(-3)
P 		438.3
(3)
P 		338
B 271.6
(-0.2)
P 		107.7
(-3)
P 		110.3
(-3)
P 		459.8
(3)
P 		352
C 307
(0.3)
P 		80.6
(-3)
P 		94.7
(-2.8)
P 		486.4
(3)
P 		406
avr 264.1
(-0.3) 		102.1
(-3) 		101.9
(-3) 		461.5
(3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 220.2
(3)
P 		187.5
(1)
P 		203.5
(2)
P 		154.2
(-1)
P 		121.5
(-3)
P 		179.2
(0.5)
P 		99
B 210.3
(0.5)
P 		176.2
(-2.3)
P 		241.2
(3)
P 		232.6
(2.3)
P 		167
(-3)
P 		217.4
(1.1)
P 		74
C 213.9
(1)
P 		243.2
(2.4)
P 		233.9
(1.9)
P 		178.1
(-0.6)
P 		125.6
(-3)
P 		256.9
(3)
P 		131
avr 214.8
(2.2) 		202.3
(1.4) 		226.2
(3) 		188.3
(0.4) 		138
(-3) 		217.8
(2.4) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 77.8
(3)
P 		25.6
(-3)
P 		26.3
(-2.9)
P 		64.2
(1.4)
P 		52
B 86.6
(2.1)
P 		26.6
(-2.9)
P 		25.6
(-3)
P 		98
(3)
P 		72
C 101.6
(3)
P 		23.2
(-3)
P 		33
(-2.3)
P 		82
(1.5)
P 		78
avr 88.7
(3) 		25.1
(-3) 		28.3
(-2.7) 		81.4
(2.3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 40.6
(-2.2)
P 		66.7
(3)
P 		44.3
(-1.5)
P 		39.1
(-2.5)
P 		36.7
(-3)
P 		43.6
(-1.6)
P 		30
B 73.2
(0.9)
P 		58.7
(-3)
P 		58.6
(-3)
P 		61.6
(-2.2)
P 		67.9
(-0.5)
P 		81.1
(3)
P 		23
C 79.3
(2.2)
P 		74.2
(1.6)
P 		59.5
(-0.2)
P 		35.8
(-3)
P 		40.6
(-2.4)
P 		86
(3)
P 		50
avr 64.4
(1.6) 		66.5
(2.1) 		54.1
(-0.9) 		45.5
(-3) 		48.4
(-2.3) 		70.2
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184260_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16513
Sequence Type Exemplar sequence
Representative Public ID C15B12.4 NCBI
Target Description C15B12.4 /REP_DB=WormBase Gene ID /WP=CE27064 /TR=Q18005 /GB=AAK39164.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076690 NCBI Caenorhabditis elegans C15B12.4 (C15B12.4) mRNA, complete cds. 11/11 A 
SNAP00000029081 ENSEMBL cdna:SNAP chromosome:CEL140:X:6470427:6472831:-1 11/11 None
GENEFINDER00000029096 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6470427:6473594:-1 11/11 None
C15B12.4 ENSEMBL cdna:known chromosome:CEL140:X:6470321:6473705:-1 gene:C15B12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6470551-6473594(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15B12.4
Entrez Gene 180920 Entrez gene
SwissProt Q18005 EMBL-EBI
WormBase CE30864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39164 Hypothetical protein C15B12.4 [Caenorhabditis elegans] ref|NP_509091.2| C15B12.4 [Caenorhabditis elegans] 0.0
blast T15502 hypothetical protein C15B12.4 - Caenorhabditis elegans 0.0
blast T15502 hypothetical protein C15B12.4 - Caenorhabditis elegans 1.0E-172
blast CAE61265 Hypothetical protein CBG05073 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:184260_S_AT
aagtggaaacggtcccattgctgctgatactaaagctgtcctgaacttaatggaaaatgg
agtacaaaaaaatagaaccatacacggaatggccgctgcggatggagataacactcatgt
tcaaagtttgtctatgattgggaacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGAAACGGTCCCATTGCTGCT 508 159 1287 Antisense
GGTCCCATTGCTGCTGATACTAAAG 19 503 1297 Antisense
GCTGCTGATACTAAAGCTGTCCTGA 159 297 1306 Antisense
GATACTAAAGCTGTCCTGAACTTAA 703 393 1312 Antisense
AAAGCTGTCCTGAACTTAATGGAAA 95 123 1318 Antisense
GAACCATACACGGAATGGCCGCTGC 668 345 1361 Antisense
TACACGGAATGGCCGCTGCGGATGG 650 641 1367 Antisense
GGCCGCTGCGGATGGAGATAACACT 248 543 1377 Antisense
GCGGATGGAGATAACACTCATGTTC 615 293 1384 Antisense
AACACTCATGTTCAAAGTTTGTCTA 82 137 1396 Antisense
AAGTTTGTCTATGATTGGGAACATT 533 155 1410 Antisense
Sequence Source Affymetrix Proprietary Database