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[184259_at]

Description C15B12.4 /REP_DB=WormBase Gene ID /WP=CE27064 /TR=Q18005 /GB=AAK39164.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      6grp_highest_nonorm > 90      6grp_total > 34      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 246.8
(3)
P 		91.1
(-3)
A 		101.9
(-2.6)
A 		207.3
(1.5)
P 		156
B 263.1
(0.9)
P 		120
(-3)
A 		125.1
(-2.9)
P 		341
(3)
P 		221
C 277.5
(1.3)
P 		111.8
(-3)
M 		130.2
(-2.5)
P 		341.9
(3)
P 		230
avr 262.5
(1.9) 		107.6
(-3) 		119.1
(-2.6) 		296.7
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 149.9
(0.8)
P 		182.6
(3)
P 		179.2
(2.8)
P 		100
(-2.5)
P 		115.9
(-1.5)
P 		92.9
(-3)
P 		90
B 186.2
(2.3)
P 		197.1
(3)
P 		174.7
(1.5)
P 		148.7
(-0.2)
P 		106.2
(-3)
P 		110.5
(-2.7)
P 		91
C 169.3
(1.6)
P 		190.3
(3)
P 		155.1
(0.6)
P 		101.3
(-3)
P 		122.3
(-1.6)
P 		119.4
(-1.8)
P 		89
avr 168.5
(1.4) 		190
(3) 		169.7
(1.5) 		116.7
(-2.3) 		114.8
(-2.5) 		107.6
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 89.9
(3)
P 		19.8
(-3)
A 		26.6
(-2.4)
A 		30.3
(-2.1)
P 		70
B 83.9
(3)
P 		29.6
(-2.9)
A 		29
(-3)
P 		72.7
(1.8)
P 		55
C 91.9
(3)
P 		32.1
(-3)
M 		45.4
(-1.7)
P 		57.7
(-0.4)
P 		60
avr 88.6
(3) 		27.2
(-3) 		33.7
(-2.4) 		53.6
(-0.4) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 27.6
(-2.3)
P 		65
(3)
P 		39
(-0.7)
P 		25.4
(-2.6)
P 		35
(-1.2)
P 		22.6
(-3)
P 		42
B 64.8
(2.8)
P 		65.6
(3)
P 		42.4
(-2.3)
P 		39.4
(-3)
P 		43.1
(-2.2)
P 		41.2
(-2.6)
P 		26
C 62.7
(3)
P 		58.1
(2.3)
P 		39.5
(-0.3)
P 		20.4
(-3)
P 		39.6
(-0.3)
P 		40
(-0.2)
P 		42
avr 51.7
(1.1) 		62.9
(3) 		40.3
(-0.9) 		28.4
(-3) 		39.2
(-1.1) 		34.6
(-1.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16513
Sequence Type Exemplar sequence
Representative Public ID C15B12.4 NCBI
Target Description C15B12.4 /REP_DB=WormBase Gene ID /WP=CE27064 /TR=Q18005 /GB=AAK39164.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076690(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076690 NCBI Caenorhabditis elegans C15B12.4 (C15B12.4) mRNA, complete cds. 10/11 A 
SNAP00000029081 ENSEMBL cdna:SNAP chromosome:CEL140:X:6470427:6472831:-1 10/11 None
GENEFINDER00000029096 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6470427:6473594:-1 10/11 None
C15B12.4 ENSEMBL cdna:known chromosome:CEL140:X:6470321:6473705:-1 gene:C15B12.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6470551-6473594(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15B12.4
Entrez Gene 180920 Entrez gene
SwissProt Q18005 EMBL-EBI
WormBase CE30864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39164 Hypothetical protein C15B12.4 [Caenorhabditis elegans] ref|NP_509091.2| C15B12.4 [Caenorhabditis elegans] 0.0
blast T15502 hypothetical protein C15B12.4 - Caenorhabditis elegans 0.0
blast T15502 hypothetical protein C15B12.4 - Caenorhabditis elegans 1.0E-172
blast CAE61265 Hypothetical protein CBG05073 [Caenorhabditis briggsae] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:184259_AT
gcaaccaatcttctagtgctggagaaatccaagcttttggaaattccaatgcgttctcgg
atggaaacagttcggtgaacttgatgtcgaatacgaatatcgaaagtgatagcggattag
gagtcgttcacattgacggtgctgggcaaggaacggataactatgtggttgctagcaatg
gtttaaaatttgtcaactcggaaaatgatgctgcttttgttggctccggaaatattcgtg
gaagtggaagtgatacaaactcactagcatctcaaagtgtggagacagccgtggatccaa
gtggattttcaaatggagttggtggtgctagtggaaatgaaaacaatgtaactggatcag
gatttgttgaacttgacggtgatatcatgaatggaaattcttctatgcaggcttttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACCAATCTTCTAGTGCTGGAGA 173 321 869 Antisense
GAAATTCCAATGCGTTCTCGGATGG 239 363 908 Antisense
GATAGCGGATTAGGAGTCGTTCACA 88 425 976 Antisense
GTCGTTCACATTGACGGTGCTGGGC 434 471 991 Antisense
GGTGCTGGGCAAGGAACGGATAACT 693 501 1006 Antisense
AAATGATGCTGCTTTTGTTGGCTCC 489 119 1071 Antisense
GTTGGCTCCGGAAATATTCGTGGAA 406 435 1087 Antisense
ATACAAACTCACTAGCATCTCAAAG 116 25 1121 Antisense
GAGACAGCCGTGGATCCAAGTGGAT 14 393 1150 Antisense
GGAGTTGGTGGTGCTAGTGGAAATG 451 515 1183 Antisense
GAAATTCTTCTATGCAGGCTTTTGG 598 363 1262 Antisense
Sequence Source Affymetrix Proprietary Database