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[184258_at]

Description Y62E10A.3 /REP_DB=WormBase Gene ID /WP=CE22691 /TR=Q9U1Y1 /GB=CAB60593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 7.7
(-3)
A 		61.9
(3)
A 		19.5
(-1.7)
A 		7.7
(-3)
A 		54
B 28.4
(3)
A 		10.7
(-3)
A 		12.6
(-2.4)
A 		25.8
(2.1)
A 		18
C 9.7
(-2.1)
A 		25.7
(0)
A 		2.8
(-3)
A 		48.2
(3)
A 		45
avr 15.3
(-2) 		32.8
(3) 		11.6
(-3) 		27.2
(1.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 2.8
(-3)
A 		26.8
(3)
A 		5.3
(-2.4)
A 		6.7
(-2)
A 		13.5
(-0.3)
A 		9.9
(-1.2)
A 		24
B 8.2
(-2.2)
A 		4.9
(-2.7)
A 		18.7
(-0.6)
A 		2.6
(-3)
A 		22.1
(-0.1)
A 		42.6
(3)
A 		40
C 4.8
(-3)
A 		4.5
(-3)
A 		9
(-2.3)
A 		41.9
(3)
A 		6.3
(-2.7)
A 		38.8
(2.5)
A 		37
avr 5.3
(-3) 		12.1
(-1.4) 		11
(-1.6) 		17.1
(-0.2) 		14
(-0.9) 		30.4
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.8
(-2.2)
A 		13.4
(3)
A 		5.1
(-1)
A 		1.1
(-3)
A 		12
B 9.1
(3)
A 		2.6
(-3)
A 		2.9
(-2.7)
A 		5.5
(-0.3)
A 		7
C 3.2
(-1.1)
A 		7.4
(2.4)
A 		1
(-3)
A 		8.1
(3)
A 		7
avr 5
(-0.5) 		7.8
(3) 		3
(-3) 		4.9
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.5
(-3)
A 		9.5
(3)
A 		1.1
(-2.6)
A 		1.7
(-2.2)
A 		4.1
(-0.6)
A 		2.4
(-1.7)
A 		9
B 2.8
(-2.2)
A 		1.6
(-2.6)
A 		4.6
(-1.5)
A 		0.7
(-3)
A 		9
(0.3)
A 		15.9
(3)
A 		15
C 1.8
(-2.8)
A 		1.4
(-3)
A 		2.3
(-2.5)
A 		8.4
(0.6)
A 		2
(-2.7)
A 		13
(3)
A 		12
avr 1.7
(-3) 		4.2
(-1.3) 		2.7
(-2.3) 		3.6
(-1.7) 		5
(-0.7) 		10.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8892
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.3 NCBI
Target Description Y62E10A.3 /REP_DB=WormBase Gene ID /WP=CE22691 /TR=Q9U1Y1 /GB=CAB60593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070167 NCBI Caenorhabditis elegans Y62E10A.3 (Y62E10A.3) mRNA, complete cds. 11/11 None
SNAP00000008068 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13359474:13359959:-1 9/11 None
Y62E10A.3 ENSEMBL cdna:known chromosome:CEL140:IV:13359106:13359959:-1 gene:Y62E10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008091 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13359111-13359965(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62E10A.3
Entrez Gene 190452 Entrez gene
SwissProt Q9U1Y1 EMBL-EBI
WormBase CE22691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60593 Hypothetical protein Y62E10A.3 [Caenorhabditis elegans] ref|NP_502568.1| Y62E10A.3 [Caenorhabditis elegans] 2.0E-80
blast CAB60593 Hypothetical protein Y62E10A.3 [Caenorhabditis elegans] ref|NP_502568.1| Y62E10A.3 [Caenorhabditis elegans] 3.0E-61
Sequence
Target Sequence 
>C. ELEGANS:184258_AT
gaccacgctgattttgtttttactggctccgtttctcatcaccctctgcgcctcaaaagc
atcgtctagtccgtcatcgtcgtccaattcatcttcgtattctaattcttctttatcgga
ttccatagaagttaggaacactatggctgataaacgtggatttctggatatttccccgaa
ggtcatacgaattagctaccaaaccccgggaactgtgacaatcacaaatacatcggaaaa
tatggtcgattttcgaattactcctatcaaaaatgtttgtatggatgtttcgaacggttc
gattcttgccatgaagagctttactcttcatctttcgaagaccggggaagaacagtctgc
aagcccacattttattaagatgaaggaaaagaaccgaaacaaatacttcacaacccggat
tgtaaaagtttccactggttttatttactcttcggaggttttggagtggaagtacatgga
tccgagagctctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACGCTGATTTTGTTTTTACTG 430 383 15 Antisense
CAAAAGCATCGTCTAGTCCGTCATC 696 189 68 Antisense
TCGTCCAATTCATCTTCGTATTCTA 333 605 94 Antisense
GGATATTTCCCCGAAGGTCATACGA 487 509 180 Antisense
TAGCTACCAAACCCCGGGAACTGTG 89 625 207 Antisense
GGTCGATTTTCGAATTACTCCTATC 161 503 258 Antisense
TCGAACGGTTCGATTCTTGCCATGA 455 601 304 Antisense
GAGCTTTACTCTTCATCTTTCGAAG 68 389 330 Antisense
AGAACAGTCTGCAAGCCCACATTTT 520 73 363 Antisense
TCCACTGGTTTTATTTACTCTTCGG 107 587 445 Antisense
AGTACATGGATCCGAGAGCTCTGCT 588 61 485 Antisense
Sequence Source Affymetrix Proprietary Database