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[184257_at]

Description F27C1.13 /REP_DB=WormBase Gene ID /WP=CE09725 /TR=P91291 /GB=AAB37662.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 68.2
(3)
A 		42.3
(-3)
A 		53.5
(-0.4)
A 		44.6
(-2.5)
A 		26
B 63.9
(3)
M 		23.2
(-3)
A 		51.3
(1.1)
A 		54.4
(1.6)
A 		41
C 41.7
(0.6)
A 		40.5
(0.5)
A 		16
(-3)
A 		58.5
(3)
A 		43
avr 57.9
(3) 		35.3
(-3) 		40.3
(-1.7) 		52.5
(1.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.1
(0.2)
A 		28.9
(3)
A 		26.3
(2.4)
A 		19.5
(0.8)
A 		23.9
(1.8)
A 		3.3
(-3)
A 		26
B 17
(0.9)
A 		17.8
(1.3)
A 		21.4
(3)
A 		8.9
(-3)
A 		14.6
(-0.3)
A 		9.9
(-2.5)
A 		13
C 22.9
(3)
A 		12
(-1.3)
A 		20.3
(2)
A 		7.9
(-2.9)
A 		7.7
(-3)
A 		18.9
(1.4)
A 		15
avr 19
(1.2) 		19.6
(1.5) 		22.7
(3) 		12.1
(-2.3) 		15.4
(-0.7) 		10.7
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 24.8
(3)
A 		9.2
(-2.1)
A 		14
(-0.5)
A 		6.5
(-3)
A 		18
B 20.4
(3)
M 		5.7
(-3)
A 		11.9
(-0.5)
A 		11.6
(-0.6)
A 		15
C 13.8
(3)
A 		11.6
(1.4)
A 		5.6
(-3)
A 		9.9
(0.1)
A 		8
avr 19.7
(3) 		8.8
(-3) 		10.5
(-2.1) 		9.3
(-2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.2
(-1.5)
A 		10.3
(3)
A 		5.7
(0.1)
A 		4.9
(-0.4)
A 		7.2
(1)
A 		0.8
(-3)
A 		10
B 5.9
(3)
A 		5.9
(3)
A 		5.2
(1.8)
A 		2.4
(-3)
A 		5.9
(3)
A 		3.7
(-0.8)
A 		4
C 8.5
(3)
A 		3.7
(-1.2)
A 		5.2
(0.1)
A 		1.6
(-3)
A 		2.5
(-2.2)
A 		6.3
(1.1)
A 		7
avr 5.9
(1.8) 		6.6
(3) 		5.4
(1) 		3
(-3) 		5.2
(0.7) 		3.6
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2497
Sequence Type Exemplar sequence
Representative Public ID F27C1.13 NCBI
Target Description F27C1.13 /REP_DB=WormBase Gene ID /WP=CE09725 /TR=P91291 /GB=AAB37662.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059200 NCBI Caenorhabditis elegans F27C1.13 (F27C1.13) mRNA, complete cds. 11/11 None
F27C1.13 ENSEMBL cdna:known chromosome:CEL140:I:5445653:5446560:-1 gene:F27C1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014521 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5445652-5446560(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.13
Entrez Gene 185012 Entrez gene
WormBase CE39096 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491601 F27C1.13 [Caenorhabditis elegans] 1.0E-53
blast AAB37662 Hypothetical protein F27C1.13 [Caenorhabditis elegans] 2.0E-50
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184257_AT
tgaaaacccggcgagaacatttacaagaccatactctgccaaaaatattactatctacaa
ggaaaatgatacattttacacgggtcaccgtgttccagtctcaaatcatcggtacaaaac
gttggatgttctcatggatgatctcaatcagcacttctatatctatgatcatctccctta
ttttacattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAACCCGGCGAGAACATTTACA 485 573 69 Antisense
CATTTACAAGACCATACTCTGCCAA 687 213 86 Antisense
TACTCTGCCAAAAATATTACTATCT 209 647 100 Antisense
TGATACATTTTACACGGGTCACCGT 479 563 135 Antisense
TACACGGGTCACCGTGTTCCAGTCT 452 641 145 Antisense
AGTCTCAAATCATCGGTACAAAACG 699 59 165 Antisense
GGTACAAAACGTTGGATGTTCTCAT 252 503 179 Antisense
GATGTTCTCATGGATGATCTCAATC 125 411 193 Antisense
ATCTCAATCAGCACTTCTATATCTA 704 31 209 Antisense
TCTATATCTATGATCATCTCCCTTA 365 615 224 Antisense
GATCATCTCCCTTATTTTACATTAA 47 421 235 Antisense
Sequence Source Affymetrix Proprietary Database