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[184256_s_at]

Description Y17G7B.17 /REP_DB=WormBase Gene ID /WP=CE19051 /TR=Q9XXH7 /GB=CAA19464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 83      6grp_total > 79      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 775
1 2 3 4 range
A 398.8
(-2.6)
P 		355.4
(-3)
P 		417.3
(-2.5)
P 		1042.6
(3)
P 		687
B 383
(-1.9)
P 		268
(-3)
P 		351.2
(-2.2)
P 		885.5
(3)
P 		618
C 328.6
(-3)
P 		338
(-2.9)
P 		366
(-2.5)
P 		808.9
(3)
P 		480
avr 370.1
(-2.5) 		320.5
(-3) 		378.2
(-2.4) 		912.3
(3) 		592

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 396.5
(-1.8)
P 		508.5
(-0.3)
P 		306.8
(-3)
P 		355.8
(-2.3)
P 		439.8
(-1.2)
P 		753.6
(3)
P 		447
B 409
(-0.3)
P 		383.8
(-1.2)
P 		334.5
(-3)
P 		397.6
(-0.7)
P 		502.1
(3)
P 		486.3
(2.4)
P 		168
C 562.6
(2.4)
P 		355.3
(-2.9)
P 		526.9
(1.5)
P 		351.8
(-3)
P 		585.4
(3)
P 		522.7
(1.4)
P 		234
avr 456
(-0.6) 		415.9
(-1.7) 		389.4
(-2.4) 		368.4
(-3) 		509.1
(0.9) 		587.5
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 145.2
(2.4)
P 		77.1
(-3)
P 		109.1
(-0.5)
P 		152.6
(3)
P 		76
B 122.1
(-0.3)
P 		66.2
(-3)
P 		81.4
(-2.3)
P 		188.7
(3)
P 		123
C 108.8
(-1.2)
P 		97.2
(-3)
P 		127.5
(1.6)
P 		136.4
(3)
P 		39
avr 125.4
(0.4) 		80.2
(-3) 		106
(-1) 		159.2
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 73.1
(-2.7)
P 		180.8
(2.9)
P 		66.8
(-3)
P 		90.2
(-1.8)
P 		132.7
(0.4)
P 		183.5
(3)
P 		117
B 142.3
(-0)
P 		127.7
(-0.7)
P 		81.2
(-3)
P 		105.3
(-1.8)
P 		204
(3)
P 		181.3
(1.9)
P 		123
C 208.5
(3)
P 		108.4
(-1.4)
P 		134.1
(-0.2)
P 		70.7
(-3)
P 		189.4
(2.2)
P 		175
(1.5)
P 		138
avr 141.3
(0.5) 		139
(0.3) 		94
(-2.7) 		88.7
(-3) 		175.4
(2.7) 		179.9
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184256_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3112
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.17 NCBI
Target Description Y17G7B.17 /REP_DB=WormBase Gene ID /WP=CE19051 /TR=Q9XXH7 /GB=CAA19464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064170(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064170 NCBI Caenorhabditis elegans Y17G7B.17 (Y17G7B.17) mRNA, complete cds. 10/11 None
SNAP00000030331 ENSEMBL cdna:SNAP chromosome:CEL140:II:12092592:12103751:-1 10/11 None
GENEFINDER00000030392 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12092592:12100407:-1 11/11 None
Y17G7B.17 ENSEMBL cdna:known chromosome:CEL140:II:12092337:12099892:-1 gene:Y17G7B.17 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12092662-12099816(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.17
Entrez Gene 174849 Entrez gene
SwissProt Q9XXH7 EMBL-EBI
WormBase CE35650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19464 Hypothetical protein Y17G7B.17 [Caenorhabditis elegans] ref|NP_496571.2| Y17G7B.17 [Caenorhabditis elegans] 1.0E-104
blast CAA19464 Hypothetical protein Y17G7B.17 [Caenorhabditis elegans] ref|NP_496571.2| Y17G7B.17 [Caenorhabditis elegans] 2.0E-94
blast CAE73542 Hypothetical protein CBG21010 [Caenorhabditis briggsae] 1.0E-56
blast CAE73542 Hypothetical protein CBG21010 [Caenorhabditis briggsae] 2.0E-56
blast CAE73542 Hypothetical protein CBG21010 [Caenorhabditis briggsae] 9.0E-50
blast EAL26529 GA20964-PA [Drosophila pseudoobscura] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030392 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:184256_S_AT
tgggcgctatgcacagttttggacaaatgcaccaacaaatgatgtcagacatgaatatga
tgacgggcggtatgctacgaaatatgggaatgggcggcccaatgtttggcgggcttatgg
tcccaagcccatttggagcaattactgatggaagtggacagcagccgagtcgccgacgcc
aagagctcgagatgaatccgtttgctccgtttggaggactattgggtggtctcggtggaa
tgggaatgatgatgccaccgccaggacagggtgccaatatgtacatgagctcaagtgtaa
tgacaatcggacccgacggaaagccacgtgtcgagcagcagactgtcaggcgacatggtg
acgtcacagagactaaaagacgcgtcgacaaaaatggcgaatcgtcaatgtcaatcggac
actcgattggagatcgttcgcattttattgacaagaaacgggatcgcgaaggaaatgttc
ggaaacaacagagattccagaatttggatgaagctcccgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCGCTATGCACAGTTTTGGACA 18 555 41 Antisense
ATGGGCGGCCCAATGTTTGGCGGGC 138 49 130 Antisense
TATGGTCCCAAGCCCATTTGGAGCA 234 655 156 Antisense
CGCCGACGCCAAGAGCTCGAGATGA 126 257 211 Antisense
CGAGATGAATCCGTTTGCTCCGTTT 52 251 228 Antisense
GGAGGACTATTGGGTGGTCTCGGTG 439 511 253 Antisense
AGTGTAATGACAATCGGACCCGACG 687 57 334 Antisense
GACCCGACGGAAAGCCACGTGTCGA 424 381 350 Antisense
GTGTCGAGCAGCAGACTGTCAGGCG 294 487 368 Antisense
GGAGATCGTTCGCATTTTATTGACA 131 519 469 Antisense
AGAATTTGGATGAAGCTCCCGCTCC 649 75 539 Antisense
Sequence Source Affymetrix Proprietary Database