[Home] | [Total List]

[184255_at]

Description C46H11.8 /REP_DB=WormBase Gene ID /WP=CE08790 /TR=Q9GYJ3 /GB=AAF99887.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      6grp_highest_nonorm > 70      6grp_total > 03      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 954
1 2 3 4 range
A 103.6
(-3)
A 		998.8
(3)
P 		827.8
(1.9)
P 		189.9
(-2.4)
A 		895
B 91.1
(-3)
M 		802.6
(1.5)
P 		1038.5
(3)
P 		84.7
(-3)
A 		954
C 105.1
(-3)
A 		907.5
(3)
P 		868.8
(2.7)
P 		105.9
(-3)
A 		802
avr 99.9
(-3) 		903
(2.9) 		911.7
(3) 		126.8
(-2.8) 		812

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 475.2
(3)
P 		473.7
(3)
P 		280
(-2.3)
P 		378.9
(0.4)
P 		254
(-3)
P 		325.5
(-1.1)
P 		221
B 300.4
(3)
P 		186.2
(-1.1)
P 		160.9
(-2)
P 		248.7
(1.1)
P 		219.8
(0.1)
P 		132.9
(-3)
P 		168
C 287.6
(0.4)
P 		271.2
(-0.1)
P 		381.4
(3)
P 		363.8
(2.5)
P 		376.3
(2.9)
P 		167
(-3)
P 		214
avr 354.4
(3) 		310.4
(1.2) 		274.1
(-0.3) 		330.5
(2) 		283.4
(0.1) 		208.5
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 37.7
(-2.7)
A 		216.8
(3)
P 		216.4
(3)
P 		27.8
(-3)
A 		189
B 29
(-2.7)
M 		198.2
(1.9)
P 		240.6
(3)
P 		18
(-3)
A 		223
C 34.8
(-2.6)
A 		260.9
(2.1)
P 		302.8
(3)
P 		17.9
(-3)
A 		285
avr 33.8
(-2.7) 		225.3
(2.3) 		253.3
(3) 		21.2
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 87.6
(-1.5)
P 		168.5
(3)
P 		61
(-3)
P 		96.1
(-1)
P 		76.6
(-2.1)
P 		79.3
(-2)
P 		108
B 104.5
(3)
P 		62
(-0.9)
P 		39.1
(-3)
P 		65.9
(-0.5)
P 		89.3
(1.6)
P 		49.6
(-2)
P 		65
C 106.6
(1.6)
P 		82.8
(-0.6)
P 		97.1
(0.8)
P 		73.2
(-1.4)
P 		121.8
(3)
P 		55.9
(-3)
P 		66
avr 99.6
(2.3) 		104.4
(3) 		65.7
(-2.4) 		78.4
(-0.6) 		95.9
(1.8) 		61.6
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1722
Sequence Type Exemplar sequence
Representative Public ID C46H11.8 NCBI
Target Description C46H11.8 /REP_DB=WormBase Gene ID /WP=CE08790 /TR=Q9GYJ3 /GB=AAF99887.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059107
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043106 ENSEMBL cdna:SNAP chromosome:CEL140:I:5044298:5045723:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059107 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043158 8/11 Cross Hyb Matching Probes None
C46H11.8 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5044297-5045723(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99887 Hypothetical protein C46H11.8 [Caenorhabditis elegans] ref|NP_491508.2| C46H11.8 [Caenorhabditis elegans] 6.0E-94
blast AAF99886 Hypothetical protein C46H11.7 [Caenorhabditis elegans] ref|NP_491507.1| C46H11.7 [Caenorhabditis elegans] 5.0E-68
blast CAE65957 Hypothetical protein CBG11139 [Caenorhabditis briggsae] 9.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.5E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.7E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.3E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.3E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000043106 1 263-285
Sequence
Target Sequence 
>C. ELEGANS:184255_AT
cagcaccacatgtgccgatcgttctaacccatccaccgggagatctgattgtccggctcg
tgccgcactttgtaataacgcagcttattacaatcttatgacagtccagtgtccggtaac
ttgtggaagatgctccacaaatagtacttctagctattccagtaggtggcagttgcctct
tgcttcgctgatcagctgtagctttttttacctgcttctgtctaatatgcttgctttgtt
tgccttagcttttcttatattttcgtttgcactaactgaggaaatttcagccacctgtgc
tgatcgtgtcaatccaacaactggagtttccgattgcccagctcgtgcttctctttgcaa
caactcagtctactatgacatcatgaccacccaatgcccaagaacttgtggaagatgcac
atcaagctcaactatctctgccacgtcatcagcttctactactgtttcatccacttgtgt
cgaccaagtcaacgccgctacaggaacttccgattgtccaaatcgtcgtgcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCACCACATGTGCCGATCGTTCT 475 203 576 Antisense
TAACCCATCCACCGGGAGATCTGAT 7 639 600 Antisense
ACAGTCCAGTGTCCGGTAACTTGTG 500 105 676 Antisense
AGTAGGTGGCAGTTGCCTCTTGCTT 550 61 736 Antisense
GCTGTAGCTTTTTTTACCTGCTTCT 165 295 770 Antisense
ATGCTTGCTTTGTTTGCCTTAGCTT 476 43 802 Antisense
CACCTGTGCTGATCGTGTCAATCCA 317 201 867 Antisense
ACATCAAGCTCAACTATCTCTGCCA 671 105 994 Antisense
CACGTCATCAGCTTCTACTACTGTT 303 199 1017 Antisense
TACTACTGTTTCATCCACTTGTGTC 576 645 1032 Antisense
GATTGTCCAAATCGTCGTGCTTTTT 397 435 1087 Antisense
Sequence Source Affymetrix Proprietary Database