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[184254_at]

Description C46H11.7 /REP_DB=WormBase Gene ID /WP=CE08789 /TR=Q9GYJ4 /GB=AAF99886.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 955
1 2 3 4 range
A 6.9
(-3)
A 		679.6
(1.6)
P 		892.8
(3)
P 		101.3
(-2.4)
A 		886
B 5.8
(-3)
A 		663.4
(1.4)
P 		896
(3)
P 		7.6
(-3)
A 		890
C 4.7
(-3)
A 		595.2
(0.7)
P 		959.7
(3)
P 		93.1
(-2.4)
A 		955
avr 5.8
(-3) 		646.1
(1.2) 		916.2
(3) 		67.3
(-2.6) 		910

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 120.9
(-3)
A 		355.2
(3)
P 		214.4
(-0.6)
P 		212.5
(-0.7)
P 		338.1
(2.6)
P 		134.5
(-2.7)
P 		234
B 145.4
(-3)
P 		302.6
(3)
P 		189.1
(-1.3)
P 		229.2
(0.2)
P 		280.3
(2.1)
P 		211
(-0.5)
P 		157
C 154.6
(-3)
P 		336.7
(3)
P 		236.8
(-0.3)
P 		244.8
(-0)
P 		277.5
(1)
P 		213.3
(-1.1)
P 		182
avr 140.3
(-3) 		331.5
(3) 		213.4
(-0.7) 		228.8
(-0.2) 		298.6
(2) 		186.3
(-1.6) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 2.5
(-3)
A 		147.5
(0.8)
P 		233.4
(3)
P 		14.8
(-2.7)
A 		231
B 1.8
(-3)
A 		163.8
(1.7)
P 		207.6
(3)
P 		1.6
(-3)
A 		206
C 1.6
(-3)
A 		171.1
(0.1)
P 		334.5
(3)
P 		15.7
(-2.7)
A 		333
avr 2
(-3) 		160.8
(0.7) 		258.5
(3) 		10.7
(-2.8) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 22.3
(-3)
A 		126.3
(3)
P 		46.7
(-1.6)
P 		53.9
(-1.2)
P 		102
(1.6)
P 		32.7
(-2.4)
P 		104
B 50.6
(-2.6)
P 		100.7
(1.8)
P 		45.9
(-3)
P 		60.7
(-1.7)
P 		113.9
(3)
P 		78.7
(-0.1)
P 		68
C 57.3
(-2.1)
P 		102.7
(3)
P 		60.3
(-1.8)
P 		49.2
(-3)
P 		89.8
(1.6)
P 		71.4
(-0.5)
P 		54
avr 43.4
(-3) 		109.9
(3) 		51
(-2.3) 		54.6
(-2) 		101.9
(2.3) 		60.9
(-1.4) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1620
Sequence Type Exemplar sequence
Representative Public ID C46H11.7 NCBI
Target Description C46H11.7 /REP_DB=WormBase Gene ID /WP=CE08789 /TR=Q9GYJ4 /GB=AAF99886.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059106 NCBI Caenorhabditis elegans C46H11.7 (C46H11.7) mRNA, complete cds. 11/11 None
SNAP00000043105 ENSEMBL cdna:SNAP chromosome:CEL140:I:5042195:5043055:-1 11/11 None
GENEFINDER00000043155 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5042195:5043055:-1 11/11 None
C46H11.7 ENSEMBL cdna:known chromosome:CEL140:I:5042195:5043055:-1 gene:C46H11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5042194-5043055(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.7
Entrez Gene 183524 Entrez gene
SwissProt Q9GYJ4 EMBL-EBI
WormBase CE08789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99886 Hypothetical protein C46H11.7 [Caenorhabditis elegans] ref|NP_491507.1| C46H11.7 [Caenorhabditis elegans] 2.0E-95
blast AAF99887 Hypothetical protein C46H11.8 [Caenorhabditis elegans] ref|NP_491508.2| C46H11.8 [Caenorhabditis elegans] 1.0E-76
blast CAE65719 Hypothetical protein CBG10799 [Caenorhabditis briggsae] 6.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.0E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.3E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184254_AT
ggcagctggtcaatgttgtcctgtaaccaccgttccccttgtgacttcaaccactgctgc
tgtggtaacagattctgatggatctacagtaaccacaactgcttcagcagttacagtaac
ctcaacctctacaacttcgtgtgctgatcgcctcaatccatctaccggggtctctgattg
tccagcacttgcctatctttgcaacgacaccaccacctactacacagtcatgactcaaca
atgtccaagaacatgcggtcgttgtaactcaactaccacaagctccactagctgtgccga
tcttgtaaacccatccaccggagtttctgattgtactgcacgagcttctttgtgcaatga
ttcagtctactatgccgtcatgactcaacaatgcccaagaacttgtggaagatgtaactc
aagctctaccgtaacttcatcttcctccacaacagcttcaaccacctgtgttgaccaagt
caacgcagctacaggagtctccgattgtccaaaccgtcgtgcattctgtaccaattctgc
ctacgcaacccttatgagagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGCTGGTCAATGTTGTCCTGTA 704 535 135 Antisense
TCAACCTCTACAACTTCGTGTGCTG 351 631 256 Antisense
TCCAGCACTTGCCTATCTTTGCAAC 218 589 315 Antisense
CTACCACAAGCTCCACTAGCTGTGC 500 225 407 Antisense
ACTAGCTGTGCCGATCTTGTAAACC 382 99 421 Antisense
GATTGTACTGCACGAGCTTCTTTGT 476 435 463 Antisense
GTCTACTATGCCGTCATGACTCAAC 531 469 499 Antisense
ACTCAAGCTCTACCGTAACTTCATC 51 99 551 Antisense
CAACGCAGCTACAGGAGTCTCCGAT 449 187 615 Antisense
GTCCAAACCGTCGTGCATTCTGTAC 259 477 641 Antisense
CCTACGCAACCCTTATGAGAGCTCA 652 267 674 Antisense
Sequence Source Affymetrix Proprietary Database