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[184253_at]

Description Y51H4A.10 /REP_DB=WormBase Gene ID /WP=CE22337 /TR=Q9NAD9 /GB=CAB61144.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 32.2
(-3)
A 		83.2
(2.1)
A 		37.5
(-2.5)
A 		91.9
(3)
A 		60
B 69.2
(3)
A 		17.1
(-2.6)
A 		13
(-3)
A 		29
(-1.3)
A 		56
C 54.6
(-1.8)
A 		87.1
(-0.1)
A 		30.5
(-3)
A 		148.6
(3)
A 		118
avr 52
(-0.6) 		62.5
(0.4) 		27
(-3) 		89.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 53.3
(0.2)
A 		22.9
(-2.9)
A 		21.7
(-3)
A 		70.9
(2)
A 		36.2
(-1.5)
A 		80.3
(3)
A 		59
B 34.6
(3)
A 		28.7
(1.8)
A 		17.2
(-0.5)
A 		4.4
(-3)
A 		15.4
(-0.8)
A 		4.5
(-3)
A 		30
C 32.1
(0.5)
A 		53.9
(3)
A 		5.5
(-2.5)
A 		35.3
(0.9)
A 		21.8
(-0.7)
A 		1.3
(-3)
A 		53
avr 40
(3) 		35.2
(1.9) 		14.8
(-3) 		36.9
(2.3) 		24.5
(-0.7) 		28.7
(0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 11.7
(-1.6)
A 		18.1
(3)
A 		9.8
(-3)
A 		13.5
(-0.3)
A 		8
B 22.1
(3)
A 		4.2
(-2.6)
A 		3
(-3)
A 		6.2
(-2)
A 		19
C 18.1
(0.1)
A 		25
(3)
A 		10.6
(-3)
A 		25.1
(3)
A 		15
avr 17.3
(3) 		15.8
(2.1) 		7.8
(-3) 		14.9
(1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.8
(-0.9)
A 		8.1
(-1.6)
A 		4.7
(-3)
A 		18
(2.4)
A 		10.9
(-0.5)
A 		19.6
(3)
A 		15
B 12
(3)
A 		9.6
(1.7)
A 		4.2
(-1.3)
A 		1.2
(-3)
A 		6.2
(-0.2)
A 		1.7
(-2.7)
A 		11
C 11.9
(1.3)
A 		16.5
(3)
A 		1.4
(-2.6)
A 		7.1
(-0.5)
A 		7
(-0.5)
A 		0.4
(-3)
A 		16
avr 11.2
(2.9) 		11.4
(3) 		3.4
(-3) 		8.8
(1.1) 		8
(0.5) 		7.2
(-0.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9304
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.10 NCBI
Target Description Y51H4A.10 /REP_DB=WormBase Gene ID /WP=CE22337 /TR=Q9NAD9 /GB=CAB61144.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070567, NM_070566
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000220 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16625856:16633363:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070567 3/11 Cross Hyb Matching Probes None
SNAP00000000186 3/11 Cross Hyb Matching Probes None
Y51H4A.26 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16625861-16633369(+) 94.8 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70119 Hypothetical protein Y51H4A.26 [Caenorhabditis elegans] ref|NP_502968.1| Y51H4A.26 [Caenorhabditis elegans] 6.0E-53
blast CAB61144 Hypothetical protein Y51H4A.10 [Caenorhabditis elegans] ref|NP_502967.1| Y51H4A.10 [Caenorhabditis elegans] 8.0E-31
Sequence
Target Sequence 
>C. ELEGANS:184253_AT
agtatttgcctgccgatttggccaaaaaatgcgaaaattactttgattgccaacagtacc
aaacgtgcatcttcggacattgcgtaagaaaatgcacaagtgaacgtgattgtccacttg
gctatatttgcttcaaaaacggagatggacaacgatgcatcaagaaaaattgcccgaaaa
gatgcccatatggctgtaaatatgttttcaccattcattcattctccgcttcccagcaaa
aaatgaaggttttcctgcttcttctcatttgcctggcaacattggcttacagtcaaaaca
cgattcccaaacattttcttgattgtccataccccaaaatctgtgccagtggtctttgtg
tgaatcagatttttgatagtacctgtgaaagagataatttcaatttgtgttcggtcgccg
ccaaaaagacatgtggggaaatgacgggcgagttgcgggcgccagagatatctcaccagc
cgaaactctatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATTTGCCTGCCGATTTGGCCAA 196 63 548 Antisense
GTACCAAACGTGCATCTTCGGACAT 288 439 603 Antisense
TGTCCACTTGGCTATATTTGCTTCA 312 557 658 Antisense
ATGTTTTCACCATTCATTCATTCTC 664 47 749 Antisense
ATTCTCCGCTTCCCAGCAAAAAATG 635 9 768 Antisense
AACACGATTCCCAAACATTTTCTTG 6 135 844 Antisense
TTTTCTTGATTGTCCATACCCCAAA 230 677 861 Antisense
AATCTGTGCCAGTGGTCTTTGTGTG 424 169 885 Antisense
GGAAATGACGGGCGAGTTGCGGGCG 583 525 984 Antisense
GAGTTGCGGGCGCCAGAGATATCTC 647 395 997 Antisense
ATCTCACCAGCCGAAACTCTATATT 527 31 1017 Antisense
Sequence Source Affymetrix Proprietary Database