[Home] | [Total List]

[184252_at]

Description C33H5.15 /REP_DB=WormBase Gene ID /WP=CE04158 /TR=Q18412 /GB=AAA82271.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 16      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 45.9
(-3)
A 		46.2
(-3)
A 		92.6
(-0)
A 		139.9
(3)
A 		94
B 23.6
(-3)
A 		69.9
(0.5)
A 		62.1
(-0.1)
A 		102.6
(3)
A 		79
C 19.4
(-2.7)
A 		16.3
(-3)
A 		57
(0.7)
A 		82
(3)
A 		66
avr 29.6
(-3) 		44.1
(-1.9) 		70.6
(0.1) 		108.2
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 50.1
(-2.9)
A 		41.8
(-3)
A 		71.5
(-2.6)
A 		153.8
(-1.6)
A 		214.5
(-0.9)
P 		537
(3)
P 		495
B 99.5
(-2)
A 		15.5
(-3)
A 		115.2
(-1.8)
A 		145.1
(-1.4)
A 		278
(0.3)
P 		495.5
(3)
P 		480
C 61.8
(-3)
A 		77.7
(-2.8)
A 		88.1
(-2.7)
A 		143.1
(-1.9)
A 		227
(-0.8)
P 		521.2
(3)
P 		459
avr 70.5
(-2.7) 		45
(-3) 		91.6
(-2.4) 		147.3
(-1.7) 		239.8
(-0.5) 		517.9
(3) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.7
(-0.2)
A 		10
(-3)
A 		24.2
(3)
A 		20.5
(1.4)
A 		14
B 7.5
(-3)
A 		17.3
(1.1)
A 		14.4
(-0.1)
A 		21.9
(3)
A 		14
C 6.4
(-2.3)
A 		4.7
(-3)
A 		19.9
(3)
A 		13.8
(0.6)
A 		15
avr 10.2
(-3) 		10.7
(-2.7) 		19.5
(3) 		18.7
(2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 9.2
(-3)
A 		14.9
(-2.7)
A 		15.6
(-2.7)
A 		39
(-1.5)
A 		64.7
(-0.3)
P 		130.7
(3)
P 		122
B 34.6
(-2)
A 		5.2
(-3)
A 		28
(-2.2)
A 		38.4
(-1.9)
A 		112.9
(0.6)
P 		184.8
(3)
P 		180
C 22.9
(-3)
A 		23.7
(-2.9)
A 		22.4
(-3)
A 		28.8
(-2.7)
A 		73.4
(-1)
P 		174.5
(3)
P 		152
avr 22.2
(-2.7) 		14.6
(-3) 		22
(-2.7) 		35.4
(-2.2) 		83.7
(-0.2) 		163.3
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9744
Sequence Type Exemplar sequence
Representative Public ID C33H5.15 NCBI
Target Description C33H5.15 /REP_DB=WormBase Gene ID /WP=CE04158 /TR=Q18412 /GB=AAA82271.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068889 NCBI Caenorhabditis elegans (S. pombe chromosome segregation protein) homolog family member (sgo-1) (sgo-1) mRNA, complete cds. 11/11 None
SNAP00000004484 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7794972:7796249:-1 10/11 None
GENEFINDER00000004501 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7794972:7796249:-1 11/11 None
C33H5.15 ENSEMBL cdna:known chromosome:CEL140:IV:7794871:7796249:-1 gene:C33H5.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7794977-7796255(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sgo-1
Ensembl C33H5.15
Entrez Gene 183189 Entrez gene
SwissProt Q18412 EMBL-EBI
WormBase CE34732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82271 (s. pombe chromosome segregation protein) homolog protein 1 [Caenorhabditis elegans] ref|NP_501290.2| (S. pombe chromosome segregation protein) homolog family member (sgo-1) [Caenorhabditis elegans] 1.0E-155
blast AAA82271 (s. pombe chromosome segregation protein) homolog protein 1 [Caenorhabditis elegans] ref|NP_501290.2| (S. pombe chromosome segregation protein) homolog family member (sgo-1) [Caenorhabditis elegans] 1.0E-147
blast CAE70888 Hypothetical protein CBG17678 [Caenorhabditis briggsae] 8.0E-94
blast CAE70888 Hypothetical protein CBG17678 [Caenorhabditis briggsae] 6.0E-91
Sequence
Target Sequence 
>C. ELEGANS:184252_AT
ttggaacctgaaccgagtggcttaaatacgcgacggccaccaaaattagagttaaatttg
gaaagaggtaggaatgaaatgattttgaatatattttcatttttgagtaatgtttcagtt
gacgaaataccattttgtcagtcttctatgcaaggagaaattgatgaaaatgaaattcga
tttgataataattcatctcaaagtacgtcttcaattcaaaacgctgtaaatggaactcct
cgaaaaaaacaaagcgtcggaaagggtcgaagaagtgagctgttccaaagttttaacgct
gattcatctattgtcgaagaagcatctacaattccaacaaatcggcgtgcacctatgctc
attgctccatcatcaactcctgcaggcccttctaagccaacggctaggaaacctccaaca
ccaagattcaaaaagccatcaactcccgcccttgcaccacaatcagatgacaccgaacta
tcatcaacggttcgtcgtcaacgatctgcgaaaatgaatatcaaatcattgaaagaacca
agtggaaaagacaaactccgtcgacctggaaagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAACCTGAACCGAGTGGCTTAA 702 685 376 Antisense
ATACGCGACGGCCACCAAAATTAGA 327 1 401 Antisense
TACCATTTTGTCAGTCTTCTATGCA 208 651 503 Antisense
GAGCTGTTCCAAAGTTTTAACGCTG 153 375 652 Antisense
CAACAAATCGGCGTGCACCTATGCT 705 189 710 Antisense
TAAGCCAACGGCTAGGAAACCTCCA 173 631 768 Antisense
GAAACCTCCAACACCAAGATTCAAA 380 355 783 Antisense
ATTCAAAAAGCCATCAACTCCCGCC 169 11 801 Antisense
CCCTTGCACCACAATCAGATGACAC 34 259 824 Antisense
CAACGGTTCGTCGTCAACGATCTGC 490 183 860 Antisense
CAAACTCCGTCGACCTGGAAAGCAT 439 191 927 Antisense
Sequence Source Affymetrix Proprietary Database