[Home] | [Total List]

[184251_at]

Description F27C1.12 /REP_DB=WormBase Gene ID /WP=CE09724 /TR=P91290 /GB=AAB37661.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 54.9
(0.8)
P 		13.7
(-3)
A 		20.2
(-2.4)
A 		78.5
(3)
A 		65
B 48.2
(3)
A 		42
(1.8)
P 		17.3
(-3)
A 		43.8
(2.1)
M 		31
C 45.3
(1.8)
P 		23.2
(-1.4)
A 		12.7
(-3)
A 		53.2
(3)
P 		41
avr 49.5
(1.7) 		26.3
(-1.6) 		16.7
(-3) 		58.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 30.7
(1.9)
A 		36.4
(3)
A 		22
(0.3)
A 		23.8
(0.6)
A 		17.5
(-0.6)
A 		4.5
(-3)
A 		32
B 40.8
(3)
A 		24.6
(0.4)
A 		27.5
(0.8)
A 		3.9
(-3)
A 		13.7
(-1.4)
A 		11.7
(-1.7)
A 		37
C 41.5
(3)
A 		16.7
(-0.8)
A 		29.7
(1.2)
A 		7
(-2.2)
A 		8.1
(-2.1)
A 		2
(-3)
A 		40
avr 37.7
(3) 		25.9
(0.8) 		26.4
(0.9) 		11.6
(-2) 		13.1
(-1.7) 		6.1
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20
(3)
P 		3
(-3)
A 		5.3
(-2.2)
A 		11.5
(0)
A 		17
B 15.4
(3)
A 		10.4
(0.4)
P 		4
(-3)
A 		9.3
(-0.2)
M 		11
C 15
(3)
P 		6.7
(-1.7)
A 		4.4
(-3)
A 		9
(-0.4)
P 		11
avr 16.8
(3) 		6.7
(-2) 		4.6
(-3) 		9.9
(-0.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(-0.7)
A 		12.9
(3)
A 		4.8
(-1.1)
A 		6
(-0.5)
A 		5.3
(-0.9)
A 		1.1
(-3)
A 		12
B 14.2
(3)
A 		8.2
(0.3)
A 		6.7
(-0.4)
A 		1
(-3)
A 		5.5
(-1)
A 		4.4
(-1.5)
A 		13
C 15.4
(3)
A 		5.1
(-1.2)
A 		7.6
(-0.2)
A 		1.4
(-2.7)
A 		2.6
(-2.2)
A 		0.7
(-3)
A 		15
avr 11.8
(3) 		8.7
(1.1) 		6.4
(-0.3) 		2.8
(-2.6) 		4.5
(-1.5) 		2.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2390
Sequence Type Exemplar sequence
Representative Public ID F27C1.12 NCBI
Target Description F27C1.12 /REP_DB=WormBase Gene ID /WP=CE09724 /TR=P91290 /GB=AAB37661.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059199 NCBI Caenorhabditis elegans F27C1.12 (F27C1.12) mRNA, complete cds. 11/11 None
GENEFINDER00000014521 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5435815:5446340:-1 10/11 None
F27C1.12 ENSEMBL cdna:known chromosome:CEL140:I:5443815:5444122:-1 gene:F27C1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5443814-5444122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.12
Entrez Gene 185011 Entrez gene
SwissProt P91290 EMBL-EBI
WormBase CE09724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37660 Hypothetical protein F27C1.11 [Caenorhabditis elegans] ref|NP_491599.2| F27C1.11 [Caenorhabditis elegans] 0.0
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 0.0
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 4.0E-90
blast AAB37661 Hypothetical protein F27C1.12 [Caenorhabditis elegans] ref|NP_491600.1| F27C1.12 [Caenorhabditis elegans] 2.0E-32
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 4.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 1.4E-9
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:184251_AT
atgggcagaaccatcatcactagtttagaccagtttcaacatctcggaaaatacgttgca
tcatcatcaaaccctccaaaaggtgtggatttggaaaagattcaagaaaaatattcagct
agtttgagacgaaatccgcaaagaacaacagctggcggacaatcgtattggagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCAGAACCATCATCACTAGTT 114 49 13 Antisense
ATCATCACTAGTTTAGACCAGTTTC 358 29 25 Antisense
TTAGACCAGTTTCAACATCTCGGAA 76 683 37 Antisense
ATCTCGGAAAATACGTTGCATCATC 150 33 53 Antisense
TCGGAAAATACGTTGCATCATCATC 249 607 56 Antisense
TCATCAAACCCTCCAAAAGGTGTGG 296 611 76 Antisense
CAGCTAGTTTGAGACGAAATCCGCA 657 201 128 Antisense
AAATCCGCAAAGAACAACAGCTGGC 632 117 144 Antisense
GAACAACAGCTGGCGGACAATCGTA 105 353 155 Antisense
AACAGCTGGCGGACAATCGTATTGG 676 131 159 Antisense
GCTGGCGGACAATCGTATTGGAGAC 247 293 163 Antisense
Sequence Source Affymetrix Proprietary Database