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[184249_at]

Description Y73F8A.17 /REP_DB=WormBase Gene ID /WP=CE22986 /TR=Q9NA55 /GB=CAB60542.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 42      6grp_cgc > 67      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.5
(-3)
A 		27.2
(3)
A 		5.1
(-2.2)
A 		7.4
(-1.6)
A 		26
B 3.7
(-2.2)
A 		16.9
(3)
A 		11.4
(0.8)
A 		1.8
(-3)
A 		15
C 2.4
(-3)
A 		6
(-1.8)
A 		20
(3)
A 		16.3
(1.7)
A 		18
avr 2.5
(-3) 		16.7
(3) 		12.2
(1.1) 		8.5
(-0.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.7
(-3)
A 		3.5
(-2.7)
A 		2.9
(-2.9)
A 		3.8
(-2.5)
A 		17.2
(3)
A 		17.2
(3)
A 		15
B 7.8
(-3)
A 		15
(0.6)
A 		15.9
(1.1)
A 		19.8
(3)
A 		9.4
(-2.2)
A 		14.6
(0.4)
A 		12
C 2
(-3)
A 		7.7
(-1.6)
A 		2.4
(-2.9)
A 		17.6
(0.7)
A 		10.3
(-1)
A 		27.2
(3)
P 		25
avr 4.2
(-3) 		8.7
(-1.3) 		7.1
(-1.9) 		13.7
(0.7) 		12.3
(0.1) 		19.7
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A 		5.9
(3)
A 		1.3
(-2.1)
A 		1.1
(-2.3)
A 		5
B 1.2
(-1.7)
A 		4.2
(3)
A 		2.7
(0.6)
A 		0.4
(-3)
A 		4
C 0.8
(-3)
A 		1.7
(-2.1)
A 		7
(3)
A 		2.7
(-1.2)
A 		6
avr 0.8
(-3) 		3.9
(3) 		3.7
(2.6) 		1.4
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.2
(-2.1)
A 		0.6
(-2.9)
A 		1
(-2.4)
A 		5.2
(3)
A 		4.2
(1.7)
A 		5
B 2.7
(-3)
A 		5
(2.1)
A 		3.8
(-0.6)
A 		5.3
(2.8)
A 		3.8
(-0.6)
A 		5.4
(3)
A 		3
C 0.7
(-2.9)
A 		2.3
(-1.8)
A 		0.6
(-3)
A 		3.5
(-1)
A 		3.3
(-1.1)
A 		9.1
(3)
P 		9
avr 1.3
(-3) 		2.8
(-1.2) 		1.7
(-2.5) 		3.3
(-0.6) 		4.1
(0.4) 		6.2
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8895
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.17 NCBI
Target Description Y73F8A.17 /REP_DB=WormBase Gene ID /WP=CE22986 /TR=Q9NA55 /GB=CAB60542.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070451 NCBI Caenorhabditis elegans T BoX family member (tbx-40) (tbx-40) mRNA, complete cds. 11/11 A 
SNAP00000030819 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15326901:15328148:-1 11/11 None
GENEFINDER00000030914 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15326901:15328148:-1 11/11 None
Y73F8A.17 ENSEMBL cdna:known chromosome:CEL140:IV:15326901:15328148:-1 gene:Y73F8A.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15326906-15328154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-40
Ensembl Y73F8A.17
Entrez Gene 190679 Entrez gene
SwissProt Q9NA55 EMBL-EBI
WormBase CE22986 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60542 Hypothetical protein Y73F8A.17 [Caenorhabditis elegans] ref|NP_502852.1| T BoX family member (tbx-40) [Caenorhabditis elegans] sp|Q9NA55|TBX40_CAEEL Putative T-box protein 0.0
blast CAB60541 Hypothetical protein Y73F8A.16 [Caenorhabditis elegans] ref|NP_502851.1| T BoX family member (tbx-39) [Caenorhabditis elegans] sp|Q9NA56|TBX39_CAEEL Putative T-box protein 1.0E-166
blast AAF60830 Hypothetical protein Y59E9AR.5 [Caenorhabditis elegans] gb|AAF60829.1| T box family protein 30 [Caenorhabditis elegans] ref|NP_500749.1| Y59E9AR.5 [Caenorhabditis elegans] ref|NP_500750.1| T BoX family member (tbx-30) [Caenorhabditis elegans] sp|Q9N2K7|TBX30_CAEEL Putative T-box protein 7.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 1.5E-15
Sequence
Target Sequence 
>C. ELEGANS:184249_AT
gagagaagagccatcgtcaaaacgatcaaaaaatgaaacagaaattgctgttttggatat
ccttcaagttgcctcacaatcagaaaattataatgagtccacgaattctggaaggcttca
aaatgagatcagttcctctattcaccagttcccatcaacttcctatcaaaatcaatatcc
acatgcgtatccaacagtcaatactccaccaatttatgctcagcaatttccagctccatt
tgatgaaaagcaaaatcaattctatccaaaaactgatgaaaatctggcgccaaactgtgc
tcaagatgcttcaagtttgccaaactttgcgatgaatcaaaaggcttcttttgcaaatca
atatccatatcatccatattaccatcaatattctcagcttgatcatggatctccatatca
gtacatgaataactccatcaattccgactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAAGAGCCATCGTCAAAACGA 467 393 618 Antisense
ATTTATGCTCAGCAATTTCCAGCTC 251 15 829 Antisense
GCAATTTCCAGCTCCATTTGATGAA 421 323 840 Antisense
GCAAAATCAATTCTATCCAAAAACT 398 319 867 Antisense
AAATCTGGCGCCAAACTGTGCTCAA 135 119 897 Antisense
AGTTTGCCAAACTTTGCGATGAATC 579 61 931 Antisense
GGCTTCTTTTGCAAATCAATATCCA 265 537 960 Antisense
TATCCATATCATCCATATTACCATC 692 657 979 Antisense
TATTACCATCAATATTCTCAGCTTG 592 663 994 Antisense
ATGGATCTCCATATCAGTACATGAA 641 51 1022 Antisense
GAATAACTCCATCAATTCCGACTCC 517 327 1044 Antisense
Sequence Source Affymetrix Proprietary Database