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[184248_at]

Description F46F11.2 /REP_DB=WormBase Gene ID /WP=CE10598 /TR=P91306 /GB=AAK21380.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 24      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 946
1 2 3 4 range
A 216.7
(-3)
A 		545.1
(-0.6)
P 		795.9
(1.2)
P 		1042.6
(3)
P 		826
B 176.1
(-3)
A 		482.5
(-1)
P 		710.1
(0.4)
P 		1110.6
(3)
P 		935
C 164.8
(-3)
A 		510.4
(-0.2)
P 		692.2
(1.3)
P 		908
(3)
P 		743
avr 185.9
(-3) 		512.7
(-0.7) 		732.7
(0.9) 		1020.4
(3) 		835

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5556
1 2 3 4 5 6 range
A 109.1
(-3)
A 		231.2
(-2.9)
A 		377.1
(-2.7)
P 		975.7
(-2.1)
P 		3930.6
(1.1)
P 		5665.3
(3)
P 		5556
B 129.4
(-3)
A 		181.3
(-2.9)
A 		380.2
(-2.7)
P 		831.5
(-2)
P 		3860.1
(2.1)
P 		4505.7
(3)
P 		4376
C 152.6
(-3)
A 		176.6
(-3)
A 		385.4
(-2.7)
P 		903.3
(-2.1)
P 		4764.7
(2.8)
P 		4959.8
(3)
P 		4807
avr 130.4
(-3) 		196.4
(-2.9) 		380.9
(-2.7) 		903.5
(-2.1) 		4185.1
(2) 		5043.6
(3) 		4913
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 78.9
(-3)
A 		118.3
(-1.2)
P 		208.1
(3)
P 		152.6
(0.4)
P 		129
B 56.2
(-3)
A 		119.2
(-0.9)
P 		164.5
(0.6)
P 		236.7
(3)
P 		181
C 54.5
(-3)
A 		146.7
(-0)
P 		241.3
(3)
P 		153.1
(0.2)
P 		187
avr 63.2
(-3) 		128.1
(-0.2) 		204.6
(3) 		180.8
(2) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1660
1 2 3 4 5 6 range
A 20.1
(-3)
A 		82.2
(-2.7)
A 		82.1
(-2.7)
P 		247.5
(-2)
P 		1186.1
(2.1)
P 		1379.3
(3)
P 		1359
B 45
(-3)
A 		60.3
(-2.9)
A 		92.3
(-2.8)
P 		220.2
(-2.4)
P 		1568.3
(2.6)
P 		1680.2
(3)
P 		1635
C 56.6
(-3)
A 		53.9
(-3)
A 		98.1
(-2.8)
P 		181.6
(-2.5)
P 		1541.8
(2.6)
P 		1660.3
(3)
P 		1606
avr 40.6
(-3) 		65.5
(-2.9) 		90.8
(-2.8) 		216.4
(-2.3) 		1432.1
(2.4) 		1573.3
(3) 		1533
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.667
Sequence Type Exemplar sequence
Representative Public ID F46F11.2 NCBI
Target Description F46F11.2 /REP_DB=WormBase Gene ID /WP=CE10598 /TR=P91306 /GB=AAK21380.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059244 NCBI Caenorhabditis elegans C.Elegans Y-box family member (cey-2) (cey-2) mRNA, complete cds. 11/11 None
SNAP00000023449 ENSEMBL cdna:SNAP chromosome:CEL140:I:5619605:5620498:1 11/11 None
GENEFINDER00000023458 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5619605:5620498:1 11/11 None
F46F11.2.2 ENSEMBL cdna:known chromosome:CEL140:I:5619570:5620668:1 gene:F46F11.2 11/11 None
F46F11.2.1 ENSEMBL cdna:known chromosome:CEL140:I:5619570:5620668:1 gene:F46F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5619604-5620498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cey-2
Ensembl F46F11.2
Entrez Gene 172219 Entrez gene
SwissProt P91306 EMBL-EBI
WormBase CE10598 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21380 C.elegans y-box protein 2 [Caenorhabditis elegans] ref|NP_491645.1| C.Elegans Y-box family member (cey-2) [Caenorhabditis elegans] 1.0E-119
blast CAE58966 Hypothetical protein CBG02238 [Caenorhabditis briggsae] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002059 EMBL-EBI Cold-shock DNA-binding domain 2.5E-30
Sequence
Target Sequence 
>C. ELEGANS:184248_AT
tggcttcatttctcgcaacgatggcgaaaaggacatctttgttcaccagacagccattgc
caagtcagccactgaaaagttctacctccgtaccctcggggacgatgaagaggttctctt
cgatctcgtcgagggaaagaatggcccagaagctgctaacgtaacaggacccaacggaga
caatgtcattggatcgagataccgccacaagcttctctctcgcttccgcaagaaccgcaa
gcccagagcttctgtcgatggagaggaatcccagtcgaccgatgccaagccacaggagat
gtcggcggatgctgagaagaaaaagccaagaaagcaacgcaagaacagaaatcgcaagtc
gaaggcccaacagaaaggagctggtgatgccgctgattcatcggctgtcactgaatcttc
cgaatctgcttctgacgttgcttctccagactccaaatcttgttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTTCATTTCTCGCAACGATGGC 551 545 249 Antisense
ACATCTTTGTTCACCAGACAGCCAT 106 105 281 Antisense
GCCACTGAAAAGTTCTACCTCCGTA 234 279 316 Antisense
CTCCGTACCCTCGGGGACGATGAAG 632 223 334 Antisense
GAATGGCCCAGAAGCTGCTAACGTA 436 333 387 Antisense
CAAGAACCGCAAGCCCAGAGCTTCT 479 183 477 Antisense
TGGAGAGGAATCCCAGTCGACCGAT 588 549 507 Antisense
AAGGAGCTGGTGATGCCGCTGATTC 197 161 623 Antisense
GCCGCTGATTCATCGGCTGTCACTG 549 285 637 Antisense
TGTCACTGAATCTTCCGAATCTGCT 417 559 654 Antisense
TCTCCAGACTCCAAATCTTGTTCCA 186 611 691 Antisense
Sequence Source Affymetrix Proprietary Database