[Home] | [Total List]

[184247_at]

Description F49D11.4 /REP_DB=WormBase Gene ID /WP=CE17078 /TR=O44723 /GB=AAB96710.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 32.6
(-2.5)
M 		57.4
(-0.8)
A 		24.9
(-3)
A 		112.5
(3)
P 		88
B 39.4
(0.8)
A 		44.9
(1.8)
P 		51.8
(3)
A 		18.4
(-3)
A 		33
C 6.2
(-3)
A 		53.2
(0.3)
A 		19.1
(-2.1)
A 		91.4
(3)
P 		85
avr 26.1
(-3) 		51.8
(0.2) 		31.9
(-2.3) 		74.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 8.7
(-3)
A 		46
(1.5)
P 		58.4
(3)
P 		41.9
(1)
P 		54.6
(2.5)
A 		42.8
(1.1)
A 		50
B 16.3
(-3)
A 		67.4
(3)
P 		39.6
(-0.3)
P 		21.1
(-2.4)
A 		31.5
(-1.2)
A 		18.2
(-2.8)
A 		51
C 37.5
(-0.7)
A 		58.7
(2.4)
A 		41.8
(-0.1)
P 		62.6
(3)
P 		33.2
(-1.4)
P 		22.1
(-3)
A 		41
avr 20.8
(-3) 		57.4
(3) 		46.6
(1.2) 		41.9
(0.5) 		39.8
(0.1) 		27.7
(-1.9) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.9
(0.2)
M 		12.5
(0.6)
A 		6.5
(-3)
A 		16.5
(3)
P 		10
B 12.6
(3)
A 		11.1
(2)
P 		12
(2.6)
A 		3.9
(-3)
A 		9
C 2.1
(-3)
A 		15.3
(3)
A 		6.7
(-0.9)
A 		15.4
(3)
P 		13
avr 8.9
(-2.3) 		13
(3) 		8.4
(-3) 		11.9
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.6
(-3)
A 		16.4
(3)
P 		12.7
(1.5)
P 		10.6
(0.6)
P 		16.5
(3)
A 		10.4
(0.5)
A 		15
B 5.7
(-3)
A 		22.4
(3)
P 		9.6
(-1.6)
P 		5.6
(-3)
A 		12.8
(-0.4)
A 		6.8
(-2.6)
A 		17
C 13.9
(0.7)
A 		17.9
(3)
A 		10.6
(-1.2)
P 		12.6
(-0)
P 		10.7
(-1.1)
P 		7.4
(-3)
A 		11
avr 7.1
(-3) 		18.9
(3) 		11
(-1) 		9.6
(-1.7) 		13.3
(0.2) 		8.2
(-2.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1973
Sequence Type Exemplar sequence
Representative Public ID F49D11.4 NCBI
Target Description F49D11.4 /REP_DB=WormBase Gene ID /WP=CE17078 /TR=O44723 /GB=AAB96710.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060444 NCBI Caenorhabditis elegans F49D11.4 (F49D11.4) mRNA, complete cds. 11/11 None
SNAP00000015038 ENSEMBL cdna:SNAP chromosome:CEL140:I:10923050:10923456:1 9/11 None
F49D11.4 ENSEMBL cdna:known chromosome:CEL140:I:10921322:10923738:1 gene:F49D11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10921252-10923669(+) 65.39 100.0
Public Domain and Genome References
Gene Title
Ensembl F49D11.4
Entrez Gene 186033 Entrez gene
SwissProt O44723 EMBL-EBI
WormBase CE17078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96710 Hypothetical protein F49D11.4 [Caenorhabditis elegans] ref|NP_492845.1| F49D11.4 [Caenorhabditis elegans] 0.0
blast AAB96710 Hypothetical protein F49D11.4 [Caenorhabditis elegans] ref|NP_492845.1| F49D11.4 [Caenorhabditis elegans] 1.0E-64
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 2.0E-41
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 6.0E-40
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 2.0E-20
blast AAA83507 Hypothetical protein F19C7.3 [Caenorhabditis elegans] ref|NP_500594.1| F19C7.3 [Caenorhabditis elegans] 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:184247_AT
aattcattgagccacccaatatttcggaaatgttatcgtgtggaatgttacgggtggaat
ggttcccttaatacagaagaaatgaattttatacgaagaaacattgatttgaggcatgga
tttaaggttcgatgtcagtgtgaagaaagcttcaataaagagctcctattcgatattcct
gaaattgaaattgtacatgcccaacttatttcttcgggagattttaagggaatgaagtgt
aaaatagtcaggctctggcggcactcattcacaccaaaagggctcaatcaggtaatccgc
ctgtggttgtcaagtgacatacctaatctacggagactacggatgaatgaatttttgcaa
cctgctaactacgaagaagcattacaaaaatttaactataagccatgggatggacttatt
gccgattttgctgtattcagatatggaatggaatcattcgattgtattgacggatgggat
attgagagaagtggtgggcaaattgctaccttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATTGAGCCACCCAATATTTC 110 177 694 Antisense
AAAGAGCTCCTATTCGATATTCCTG 235 123 850 Antisense
GTACATGCCCAACTTATTTCTTCGG 479 459 886 Antisense
AAAATAGTCAGGCTCTGGCGGCACT 452 133 934 Antisense
GCACTCATTCACACCAAAAGGGCTC 447 315 954 Antisense
AAAAGGGCTCAATCAGGTAATCCGC 434 1 969 Antisense
CAGGTAATCCGCCTGTGGTTGTCAA 290 207 982 Antisense
GTGACATACCTAATCTACGGAGACT 706 481 1007 Antisense
GAATTTTTGCAACCTGCTAACTACG 535 325 1042 Antisense
GGGATGGACTTATTGCCGATTTTGC 27 497 1100 Antisense
GTGGTGGGCAAATTGCTACCTTATT 480 489 1184 Antisense
Sequence Source Affymetrix Proprietary Database