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[184246_s_at]

Description C41D11.2 /REP_DB=WormBase Gene ID /WP=CE08659 /TR=O01974 /GB=AAC48137.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 58      6grp_total > 24      4grp_total > 61      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 359.9
(3)
P 		299.2
(1.2)
P 		342.7
(2.5)
P 		160.8
(-3)
A 		199
B 324.3
(3)
P 		263.1
(1.4)
P 		289.6
(2.1)
P 		95
(-3)
A 		229
C 284.5
(3)
P 		181.5
(-2.3)
P 		266.8
(2.1)
P 		167.3
(-3)
P 		117
avr 322.9
(3) 		247.9
(0.5) 		299.7
(2.2) 		141
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 196.8
(3)
A 		123.2
(-0.6)
M 		87.3
(-2.3)
A 		101.3
(-1.6)
A 		72.5
(-3)
A 		79.6
(-2.7)
A 		124
B 114.1
(0.6)
P 		66.5
(-1.8)
A 		160.6
(3)
A 		60.7
(-2.1)
A 		42.9
(-3)
A 		93.3
(-0.4)
P 		118
C 137.3
(0.3)
P 		192.2
(3)
P 		93.9
(-1.9)
A 		105.8
(-1.3)
A 		75.9
(-2.8)
A 		72.2
(-3)
A 		120
avr 149.4
(3) 		127.3
(1.5) 		113.9
(0.5) 		89.3
(-1.2) 		63.8
(-3) 		81.7
(-1.7) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 131
(3)
P 		65
(-0.7)
P 		89.6
(0.7)
P 		23.5
(-3)
A 		108
B 103.4
(3)
P 		65
(0.2)
P 		67.1
(0.4)
P 		20.2
(-3)
A 		83
C 94.2
(3)
P 		52.2
(-0.8)
P 		93
(2.9)
P 		28.2
(-3)
P 		66
avr 109.5
(3) 		60.7
(-0.4) 		83.2
(1.2) 		24
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 36.3
(1.2)
A 		43.8
(3)
M 		19
(-3)
A 		25.7
(-1.4)
A 		21.9
(-2.3)
A 		19.4
(-2.9)
A 		25
B 39.7
(3)
P 		22.1
(-1.5)
A 		39
(2.8)
A 		16.1
(-3)
A 		17.4
(-2.7)
A 		34.8
(1.8)
P 		24
C 50.9
(1.7)
P 		58.7
(3)
P 		23.9
(-2.6)
A 		21.3
(-3)
A 		24.6
(-2.5)
A 		24.2
(-2.5)
A 		37
avr 42.3
(3) 		41.5
(2.8) 		27.3
(-1.2) 		21
(-3) 		21.3
(-2.9) 		26.1
(-1.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184246_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1965
Sequence Type Exemplar sequence
Representative Public ID C41D11.2 NCBI
Target Description C41D11.2 /REP_DB=WormBase Gene ID /WP=CE08659 /TR=O01974 /GB=AAC48137.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058969
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002068 ENSEMBL cdna:SNAP chromosome:CEL140:I:4444731:4459186:1 None
GENEFINDER00000002078 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4444731:4446257:1 None
C41D11.2 ENSEMBL cdna:known chromosome:CEL140:I:4444720:4446586:1 gene:C41D11.2 None
NM_058969 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.H) (eif-3.H) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4444150-4446257(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol eif-3.H
Ensembl C41D11.2
Entrez Gene 172044 Entrez gene
SwissProt O01974 EMBL-EBI
WormBase CE29220 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262790_AT eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) at
ATGENOME1:20652_AT eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) at
CANINE:1583422_AT similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa cfa
CANINE_2:CFAAFFX.2153.1.S1_AT similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa cfa
CANINE_2:CFAAFFX.2153.1.S1_S_AT similar to eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa cfa
DROSOPHILA_2:1625078_AT Eukaryotic initiation factor 3 p40 subunit dm
DROSGENOME1:142505_AT Eukaryotic initiation factor 3 p40 subunit dm
CHICKEN:GGAAFFX.11891.1.S1_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa gga
HU35KSUBA:T48195_S_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HU35KSUBC:RC_N47956_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-U133A:201592_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-U133_PLUS_2:201592_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-FOCUS:201592_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-U133A_2:201592_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
U133_X3P:G4503514_3P_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-U95AV2:35327_AT eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
HG-U95E:71720_AT Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa hs
MOE430A:1415962_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430A_2:1415962_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430_2:1415962_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MU11KSUBA:AA655109_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MU11KSUBA:AA655109_G_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOE430A:1434324_X_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430A_2:1434324_X_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430_2:1434324_X_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOE430A:1434323_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430A_2:1434323_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
MOUSE430_2:1434323_AT eukaryotic translation initiation factor 3, subunit 3 (gamma) mm
RG-U34C:RC_AI179125_AT eukaryotic translation initiation factor 3, subunit 3 gamma rn
RAE230A:1388390_AT eukaryotic translation initiation factor 3, subunit 3 gamma rn
RAT230_2:1388390_AT eukaryotic translation initiation factor 3, subunit 3 gamma rn
Protein Similarities
Method ID Description E-Value
blast AAC48137 Eukaryotic initiation factor protein 3.H [Caenorhabditis elegans] ref|NP_491370.1| Eukaryotic Initiation Factor family member (eif-3.H) [Caenorhabditis elegans] 0.0
blast CAE60401 Hypothetical protein CBG04003 [Caenorhabditis briggsae] 0.0
blast AAC48136 Hypothetical protein C41D11.1 [Caenorhabditis elegans] ref|NP_491375.1| C41D11.1 [Caenorhabditis elegans] 0.0
blast NP_003747 eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa [Homo sapiens] gb|AAV38401.1| eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa [Homo sapiens] gb|AAH00386.1| Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa [Homo sapiens] emb|CAG33187.1| EIF3S3 [Homo sapiens] gb|AAX41402.1| eukaryotic translation initiation factor 3 subunit 3 gamma [synthetic construct] gb|AAX41401.1| eukaryotic translation initiation factor 3 subunit 3 gamma [synthetic construct] gb|AAX41104.1| eukaryotic translation initiation factor 3 subunit 3 gamma [synthetic construct] gb|AAX36270.1| eukaryotic translation initiation factor 3 subunit 3 gamma [synthetic construct] gb|AAD03465.1| translation initiation factor eIF3 p40 subunit [Homo sapiens] sp|O15372|IF33_HUMAN Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) 5.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000555 EMBL-EBI Peptidase M67, Mov34 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:184246_S_AT
catgctcttctgacaagtactccacgagacacttcgatttgggatccaagaagtcgcttg
aaaagtcggtccgagctatgatggctaatgttgatgagctgaacaagtcaattcagtcgt
tgacgaagtacactattgacaagcaaagacatgataatatggtgttcagtctgacgcaga
aaagagtaagaatttcgaattttgaaattaaaaatatcctgattgtatcgctaaaattta
tattccgaagtgtaacggctttcaaacctaaagtcttgttttttgaaaaccattttccaa
catatcgaggctccactaactataaaaccggatgtgaggggtacattttcggtggaataa
agcaacaggagaacgaatcacgtgtggcccgtggtgatccaacaattccaatggatgaca
tcaagagaatcaaggctccacaactccaaacaagaaatggacttttggatgagcttctcg
ccagttttgacaccaacgctctcgctgacttctcgaagactgtgaccagcgaaaatatca
cgaaaatgttcatcgctgaagctgttgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCTCTTCTGACAAGTACTCCAC 381 211 770 Antisense
AGTACTCCACGAGACACTTCGATTT 194 61 785 Antisense
AAGTCGGTCCGAGCTATGATGGCTA 304 157 832 Antisense
TTTTCCAACATATCGAGGCTCCACT 264 677 1062 Antisense
GAGGCTCCACTAACTATAAAACCGG 221 405 1076 Antisense
GTGAGGGGTACATTTTCGGTGGAAT 321 455 1103 Antisense
GAACGAATCACGTGTGGCCCGTGGT 555 329 1140 Antisense
GCCCGTGGTGATCCAACAATTCCAA 174 287 1156 Antisense
AGAGAATCAAGGCTCCACAACTCCA 639 69 1193 Antisense
GACTTCTCGAAGACTGTGACCAGCG 444 371 1276 Antisense
ATGTTCATCGCTGAAGCTGTTGCTG 464 47 1315 Antisense
Sequence Source Affymetrix Proprietary Database