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[184245_at]

Description Y37D8A.18 /REP_DB=WormBase Gene ID /WP=CE20222 /TR=Q9XWV5 /GB=CAA21535.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 76      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 48      6grp_high1_sub > Da      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 818.3
(-3)
P 		1230.2
(2.5)
P 		1267.1
(3)
P 		868.5
(-2.3)
P 		449
B 872.2
(-2.1)
P 		1032.8
(-0.3)
P 		1329.8
(3)
P 		796.5
(-3)
P 		533
C 768.2
(-3)
P 		1214.6
(2.5)
P 		1257.4
(3)
P 		836.6
(-2.2)
P 		489
avr 819.6
(-3) 		1159.2
(1.4) 		1284.8
(3) 		833.9
(-2.8) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 810
(1.3)
P 		730.4
(-1)
P 		867.7
(3)
P 		663.5
(-3)
P 		805.5
(1.2)
P 		814.2
(1.4)
P 		204
B 759.4
(-1.4)
P 		800.2
(0.2)
P 		799.7
(0.2)
P 		717.1
(-3)
P 		787.4
(-0.3)
P 		871.4
(3)
P 		154
C 691.6
(-2.3)
P 		853.3
(1.1)
P 		759.9
(-0.8)
P 		726.7
(-1.5)
P 		656.8
(-3)
P 		941.4
(3)
P 		285
avr 753.7
(-1.2) 		794.6
(0.2) 		809.1
(0.7) 		702.4
(-3) 		749.9
(-1.4) 		875.7
(3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 297.9
(2)
P 		267
(1.1)
P 		331.2
(3)
P 		127.1
(-3)
P 		204
B 278.1
(1.7)
P 		255.1
(0.7)
P 		308.1
(3)
P 		169.7
(-3)
P 		138
C 254.3
(-0.7)
P 		349.2
(1.2)
P 		438.2
(3)
P 		141.1
(-3)
P 		297
avr 276.8
(0.7) 		290.4
(1.1) 		359.2
(3) 		146
(-3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 149.3
(-3)
P 		259.8
(3)
P 		189
(-0.8)
P 		168.3
(-2)
P 		243.1
(2.1)
P 		198.2
(-0.3)
P 		111
B 264.2
(0.3)
P 		266.4
(0.4)
P 		194.2
(-2.8)
P 		189.9
(-3)
P 		319.9
(2.8)
P 		324.9
(3)
P 		135
C 256.3
(0.9)
P 		260.4
(1.1)
P 		193.4
(-1.3)
P 		146.1
(-3)
P 		212.5
(-0.6)
P 		315.1
(3)
P 		169
avr 223.3
(-0) 		262.2
(2.1) 		192.2
(-1.7) 		168.1
(-3) 		258.5
(1.9) 		279.4
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7418
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.18 NCBI
Target Description Y37D8A.18 /REP_DB=WormBase Gene ID /WP=CE20222 /TR=Q9XWV5 /GB=CAA21535.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067284 NCBI Caenorhabditis elegans Y37D8A.18 (Y37D8A.18) mRNA, complete cds. 11/11 None
SNAP00000028785 ENSEMBL cdna:SNAP chromosome:CEL140:III:12926076:12930903:1 10/11 None
GENEFINDER00000028792 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12926076:12927301:1 11/11 None
Y37D8A.18 ENSEMBL cdna:known chromosome:CEL140:III:12926076:12927565:1 gene:Y37D8A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12926071-12927297(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.18
Entrez Gene 189618 Entrez gene
SwissProt Q9XWV5 EMBL-EBI
WormBase CE20222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21309.1.S1_AT similar to mitochondrial ribosomal protein S10 cfa
CANINE_2:CFAAFFX.3372.1.S1_S_AT similar to mitochondrial ribosomal protein S10 cfa
CANINE_2:CFAAFFX.4345.1.S1_S_AT similar to mitochondrial ribosomal protein S10 cfa
DROSOPHILA_2:1622898_A_AT mitochondrial ribosomal protein S10 dm
DROSGENOME1:149941_AT mitochondrial ribosomal protein S10 dm
CHICKEN:GGA.9224.2.S1_A_AT mitochondrial ribosomal protein S10 gga
HG-U133_PLUS_2:224247_S_AT mitochondrial ribosomal protein S10 hs
HG-U133B:224247_S_AT mitochondrial ribosomal protein S10 hs
HU35KSUBA:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HU35KSUBB:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HU35KSUBC:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HU35KSUBD:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HUGENEFL:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HC-G110:HUM_ALU_AT mitochondrial ribosomal protein S10 hs
HU35KSUBB:RC_H12468_AT mitochondrial ribosomal protein S10 hs
HU35KSUBC:RC_AA457737_AT mitochondrial ribosomal protein S10 hs
HG-U133A:218106_S_AT mitochondrial ribosomal protein S10 hs
HG-U133_PLUS_2:218106_S_AT mitochondrial ribosomal protein S10 hs
HG-U133A_2:218106_S_AT mitochondrial ribosomal protein S10 hs
U133_X3P:G8922522_3P_A_AT mitochondrial ribosomal protein S10 hs
U133_X3P:HS.28444.0.A1_3P_A_AT mitochondrial ribosomal protein S10 hs
HG-U133_PLUS_2:222522_X_AT mitochondrial ribosomal protein S10 hs
HG-U133B:222522_X_AT mitochondrial ribosomal protein S10 hs
HG-U95C:50917_S_AT mitochondrial ribosomal protein S10 hs
HG-U95C:60426_AT mitochondrial ribosomal protein S10 hs
HG-U95E:84845_AT Mitochondrial ribosomal protein S10 hs
MG-U74AV2:97251_AT mitochondrial ribosomal protein S10 mm
MG-U74CV2:167330_R_AT mitochondrial ribosomal protein S10 mm
MOE430B:1428153_AT mitochondrial ribosomal protein S10 mm
MOUSE430_2:1428153_AT mitochondrial ribosomal protein S10 mm
MOUSE430_2:1458999_AT Mitochondrial ribosomal protein S10, mRNA (cDNA clone MGC:106826 IMAGE:5144028) mm
MOE430B:1458999_AT Mitochondrial ribosomal protein S10, mRNA (cDNA clone MGC:106826 IMAGE:5144028) mm
MU19KSUBA:TC23945_AT Mitochondrial ribosomal protein S10, mRNA (cDNA clone MGC:106826 IMAGE:5144028) mm
MU19KSUBA:TC23946_S_AT Mitochondrial ribosomal protein S10, mRNA (cDNA clone MGC:106826 IMAGE:5144028) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21535 Hypothetical protein Y37D8A.18 [Caenorhabditis elegans] ref|NP_499685.1| Y37D8A.18 [Caenorhabditis elegans] sp|Q9XWV5|RT10_CAEEL Putative mitochondrial ribosomal protein S10 1.0E-83
blast Q615B0 Putative mitochondrial ribosomal protein S10 emb|CAE69547.1| Hypothetical protein CBG15759 [Caenorhabditis briggsae] 5.0E-74
blast CAA21535 Hypothetical protein Y37D8A.18 [Caenorhabditis elegans] ref|NP_499685.1| Y37D8A.18 [Caenorhabditis elegans] sp|Q9XWV5|RT10_CAEEL Putative mitochondrial ribosomal protein S10 2.0E-73
blast Q615B0 Putative mitochondrial ribosomal protein S10 emb|CAE69547.1| Hypothetical protein CBG15759 [Caenorhabditis briggsae] 4.0E-65
blast CAA21542 Hypothetical protein Y37D8A.19 [Caenorhabditis elegans] ref|NP_499687.1| Y37D8A.19 [Caenorhabditis elegans] 1.0E-33
blast XP_392654 PREDICTED: similar to ENSANGP00000011333 [Apis mellifera] 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:184245_AT
cttcatccctcagaactggtcttataagccgaagcatccgaacattagcgccaacagtga
acccggccgagcaacagcaagttcaagcagttttacccgacaaactgtacagctcagttg
aaatcgagtatcgtgggcacgacaaggcggttttgaagtcatatacgtcgtttttgcagc
aagtctgccaacacctggagattcctcaaggtcgtctcgaagttcttccgtatattcgat
gggttcagccggctctgcgctcgaaattcgtccataaaaaatataaattgcattatgaga
cgagaacacacatttctaaacttgagatcctcaacgtgactggctccacagcttcaacat
tcctcgaatacatccaacgaaacatcccagaaggcgtcggaatgcgtgtcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCATCCCTCAGAACTGGTCTTAT 72 221 26 Antisense
GCCGAAGCATCCGAACATTAGCGCC 477 285 53 Antisense
ACATTAGCGCCAACAGTGAACCCGG 236 103 67 Antisense
GCAAGTTCAAGCAGTTTTACCCGAC 193 311 102 Antisense
ATATACGTCGTTTTTGCAGCAAGTC 459 17 186 Antisense
AAGTCTGCCAACACCTGGAGATTCC 653 157 206 Antisense
TCAAGGTCGTCTCGAAGTTCTTCCG 177 631 231 Antisense
TATATTCGATGGGTTCAGCCGGCTC 99 661 256 Antisense
CTCTGCGCTCGAAATTCGTCCATAA 474 231 278 Antisense
TGAGATCCTCAACGTGACTGGCTCC 23 569 348 Antisense
GAAGGCGTCGGAATGCGTGTCGGAT 407 333 415 Antisense
Sequence Source Affymetrix Proprietary Database