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[184243_s_at]

Description W01B11.3 /REP_DB=WormBase Gene ID /WP=CE18307 /TR=O45012 /GB=AAK21475.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 58      6grp_total > 58      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3729
1 2 3 4 range
A 4463.8
(0.2)
P 		5711.8
(3)
P 		4991.5
(1.4)
P 		3060.4
(-3)
P 		2651
B 5331.8
(1.5)
P 		5093.6
(0.8)
P 		5896.7
(3)
P 		3658.7
(-3)
P 		2238
C 4853.4
(-0.3)
P 		5852.2
(1.4)
P 		6789.1
(3)
P 		3314.6
(-3)
P 		3475
avr 4883
(0.6) 		5552.5
(2.2) 		5892.4
(3) 		3344.6
(-3) 		2548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4052
1 2 3 4 5 6 range
A 3095.6
(0.9)
P 		1740.5
(-2.2)
P 		2397.1
(-0.7)
P 		1412.9
(-3)
P 		2191
(-1.2)
P 		4027.7
(3)
P 		2615
B 3143.6
(-0.7)
P 		2552.8
(-1.7)
P 		2831
(-1.2)
P 		1839.4
(-3)
P 		2066.5
(-2.6)
P 		5211.2
(3)
P 		3372
C 2643.8
(-1.1)
P 		2420.2
(-1.5)
P 		1568
(-2.7)
P 		1388.2
(-3)
P 		1924
(-2.2)
P 		5440.4
(3)
P 		4052
avr 2961
(-0.5) 		2237.8
(-1.8) 		2265.4
(-1.7) 		1546.8
(-3) 		2060.5
(-2.1) 		4893.1
(3) 		3346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1918
1 2 3 4 range
A 1625.3
(3)
P 		1239.9
(1)
P 		1304.9
(1.4)
P 		448
(-3)
P 		1177
B 1700.3
(3)
P 		1258
(0.1)
P 		1366.4
(0.8)
P 		779.7
(-3)
P 		921
C 1606.6
(0.5)
P 		1682.6
(0.7)
P 		2366.2
(3)
P 		558.9
(-3)
P 		1807
avr 1644.1
(2.8) 		1393.5
(1.4) 		1679.2
(3) 		595.5
(-3) 		1084

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1664
1 2 3 4 5 6 range
A 570.6
(-1)
P 		619
(-0.5)
P 		522
(-1.4)
P 		358.3
(-3)
P 		661.2
(-0.1)
P 		980.6
(3)
P 		622
B 1093.8
(-0.5)
P 		849.7
(-1.5)
P 		687.4
(-2.2)
P 		487.2
(-3)
P 		839.6
(-1.5)
P 		1943.2
(3)
P 		1456
C 979.9
(-0.3)
P 		738.5
(-1.2)
P 		399.1
(-2.5)
P 		279.2
(-3)
P 		622.6
(-1.7)
P 		1821.2
(3)
P 		1542
avr 881.4
(-0.5) 		735.7
(-1.2) 		536.2
(-2.2) 		374.9
(-3) 		707.8
(-1.3) 		1581.7
(3) 		1207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184243_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.295
Sequence Type Exemplar sequence
Representative Public ID W01B11.3 NCBI
Target Description W01B11.3 /REP_DB=WormBase Gene ID /WP=CE18307 /TR=O45012 /GB=AAK21475.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058733 NCBI Caenorhabditis elegans W01B11.3 (W01B11.3) mRNA, complete cds. 11/11 None
SNAP00000027448 ENSEMBL cdna:SNAP chromosome:CEL140:I:3267095:3268800:1 11/11 None
GENEFINDER00000027454 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3267103:3268800:1 11/11 None
W01B11.3.2 ENSEMBL cdna:known chromosome:CEL140:I:3267093:3269116:1 gene:W01B11.3 11/11 None
W01B11.3.1 ENSEMBL cdna:known chromosome:CEL140:I:3267095:3269116:1 gene:W01B11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3267102-3268800(+) 98.09 100.0
Public Domain and Genome References
Gene Title
Ensembl W01B11.3
Entrez Gene 171901 Entrez gene
SwissProt O45012 EMBL-EBI
WormBase CE18307 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259311_AT SAR DNA-binding protein, putative at
CANINE:1592484_AT similar to nucleolar protein 5 cfa
CANINE_2:CFA.15096.1.S1_S_AT similar to nucleolar protein 5 cfa
CANINE_2:CFA.3436.1.S1_AT similar to nucleolar protein 5 cfa
CANINE_2:CFAAFFX.19325.1.S1_AT similar to nucleolar protein 5 cfa
DROSOPHILA_2:1630950_AT dm
DROSGENOME1:154624_AT dm
CHICKEN:GGA.12235.1.S1_AT nucleolar protein NOP5/NOP58 gga
HG-U133B:223096_AT nucleolar protein NOP5/NOP58 hs
HG-U133_PLUS_2:223096_AT nucleolar protein NOP5/NOP58 hs
HU35KSUBC:RC_T92935_AT nucleolar protein NOP5/NOP58 hs
U133_X3P:G6841461_3P_AT nucleolar protein NOP5/NOP58 hs
HG-U95B:53711_AT nucleolar protein NOP5/NOP58 hs
MG-U74AV2:92569_F_AT nucleolar protein 5 mm
MOE430A:1450986_AT nucleolar protein 5 mm
MOUSE430A_2:1450986_AT nucleolar protein 5 mm
MOUSE430_2:1450986_AT nucleolar protein 5 mm
MU19KSUBA:TC20486_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBA:TC21805_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBC:TC35425_AT Nucleolar protein 5 (Nol5), mRNA mm
MU19KSUBC:TC37701_AT Nucleolar protein 5 (Nol5), mRNA mm
RG-U34A:AF069782_AT nucleolar protein 5 rn
RG-U34B:RC_AA997933_AT nucleolar protein 5 rn
RAE230A:1368173_AT nucleolar protein 5 rn
RAT230_2:1368173_AT nucleolar protein 5 rn
RAE230B:1377910_AT nucleolar protein 5 rn
RAT230_2:1377910_AT nucleolar protein 5 rn
RG-U34C:RC_AI231596_AT Nucleolar protein 5 rn
YEAST_2:1774335_AT Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA Sc
Protein Similarities
Method ID Description E-Value
blast NP_491134 W01B11.3 [Caenorhabditis elegans] gb|AAK21475.1| Hypothetical protein W01B11.3 [Caenorhabditis elegans] 0.0
blast CAE68996 Hypothetical protein CBG14983 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002687 EMBL-EBI Pre-mRNA processing ribonucleoprotein, binding region 2.3E-94
Pfam IPR002687 EMBL-EBI Pre-mRNA processing ribonucleoprotein, binding region 2.3E-94
Sequence
Target Sequence 
>C. ELEGANS:184243_S_AT
tccaaatctcacagttcttctcggagagctcgtcggagcccgtctcatttctcacgctgg
atctctcgtttcgttggccaaggcaccagcctcgacgattcaaattcttggagccgagaa
ggctcttttccgtgctctcaagacgaagaaggatactccaaagtacggattgatctacca
cgctcaacttatcacacaagccccaccaaaggtcaagggaaagatggctcgtaagctcgc
tgccaagtgctctcttgccactcgtatcgacgcactttccgacgaatccgccaccaacga
gatcggaatcgaatgccgtgccgcccttgagaacgtgctcagaaccgaatcagaacgtgg
gccatccaaaaataagagctttggatcccaccgacacgacaagtacgagttcaagagtga
aacatacgaatacgacgcgtctgctgacactccagccagtcgcaagcacaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAATCTCACAGTTCTTCTCGGA 266 587 855 Antisense
CTCGTTTCGTTGGCCAAGGCACCAG 419 217 919 Antisense
GCACCAGCCTCGACGATTCAAATTC 360 315 937 Antisense
AAGTACGGATTGATCTACCACGCTC 238 157 1015 Antisense
CACGCTCAACTTATCACACAAGCCC 554 199 1033 Antisense
GAATCCGCCACCAACGAGATCGGAA 479 329 1138 Antisense
GATCGGAATCGAATGCCGTGCCGCC 95 419 1155 Antisense
GAGAACGTGCTCAGAACCGAATCAG 609 391 1183 Antisense
AACCGAATCAGAACGTGGGCCATCC 137 147 1197 Antisense
TACGAATACGACGCGTCTGCTGACA 573 647 1279 Antisense
CTCCAGCCAGTCGCAAGCACAAGAG 609 235 1304 Antisense
Sequence Source Affymetrix Proprietary Database