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[184242_at]

Description Y47H9C.10 /REP_DB=WormBase Gene ID /WP=CE20270 /TR=Q9XWD4 /GB=CAA21741.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 51      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 99.2
(1.4)
A 		109.3
(2.8)
A 		110.9
(3)
A 		68
(-3)
A 		43
B 104.4
(-0.8)
A 		124
(3)
A 		93
(-3)
P 		118.7
(2)
P 		31
C 113.2
(-1.1)
A 		155.2
(3)
A 		151
(2.6)
P 		93.7
(-3)
A 		62
avr 105.6
(-1) 		129.5
(3) 		118.3
(1.1) 		93.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 119.9
(3)
A 		109.6
(2.3)
M 		88.8
(0.9)
P 		79.1
(0.2)
A 		55.1
(-1.5)
A 		33
(-3)
A 		87
B 95.6
(-0.3)
A 		110.8
(0.8)
A 		139.3
(3)
A 		83
(-1.3)
A 		61
(-3)
A 		79.8
(-1.6)
M 		78
C 94.8
(1.2)
A 		91.7
(0.9)
A 		93.3
(1.1)
A 		111.7
(3)
A 		54.1
(-3)
A 		102.2
(2)
P 		58
avr 103.4
(2.6) 		104
(2.6) 		107.1
(3) 		91.3
(1.1) 		56.7
(-3) 		71.7
(-1.2) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 36.1
(3)
A 		23.7
(0.1)
A 		29
(1.4)
A 		10
(-3)
A 		26
B 33.3
(3)
A 		30.6
(1.6)
A 		21.5
(-3)
P 		25.3
(-1.1)
P 		12
C 37.5
(0.5)
A 		44.6
(1.7)
A 		52.6
(3)
P 		15.8
(-3)
A 		37
avr 35.6
(3) 		33
(2.2) 		34.4
(2.6) 		17
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 22.1
(-0.3)
A 		39
(3)
M 		19.3
(-0.8)
P 		20.1
(-0.7)
A 		16.6
(-1.3)
A 		8
(-3)
A 		31
B 33.3
(1.6)
A 		36.9
(3)
A 		33.8
(1.8)
A 		22
(-3)
A 		24.8
(-1.9)
A 		29.8
(0.1)
M 		15
C 35.1
(3)
A 		28
(0.6)
A 		23.7
(-0.9)
A 		22.5
(-1.3)
A 		17.5
(-3)
A 		34.2
(2.7)
P 		18
avr 30.2
(1.2) 		34.6
(3) 		25.6
(-0.6) 		21.5
(-2.2) 		19.6
(-3) 		24
(-1.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1940
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.10 NCBI
Target Description Y47H9C.10 /REP_DB=WormBase Gene ID /WP=CE20270 /TR=Q9XWD4 /GB=CAA21741.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060618 NCBI Caenorhabditis elegans Y47H9C.10 (Y47H9C.10) mRNA, complete cds. 11/11 None
SNAP00000036890 ENSEMBL cdna:SNAP chromosome:CEL140:I:11909730:11911292:1 11/11 None
GENEFINDER00000036899 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11909855:11911292:1 11/11 None
Y47H9C.10 ENSEMBL cdna:known chromosome:CEL140:I:11910109:11911292:1 gene:Y47H9C.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11910039-11911223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.10
Entrez Gene 190001 Entrez gene
SwissProt Q9XWD4 EMBL-EBI
WormBase CE34513 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21741 Hypothetical protein Y47H9C.10 [Caenorhabditis elegans] ref|NP_493019.2| Y47H9C.10 [Caenorhabditis elegans] 0.0
blast CAA21741 Hypothetical protein Y47H9C.10 [Caenorhabditis elegans] ref|NP_493019.2| Y47H9C.10 [Caenorhabditis elegans] 1.0E-165
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 4.0E-69
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 4.0E-59
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 6.0E-59
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 1.0E-34
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-42
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-42
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-40
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-7
Sequence
Target Sequence 
>C. ELEGANS:184242_AT
aactattgcggccggatgatgcgaaggcagcgttctctcactttaagccaggaaatctcg
aggacattgaaattgaatatttctgcactggatacaagtacccaaagtatcccaggtgtc
ctcgatatgatgatgattcagatgacagttttgaggataatatgggaatgtacgagcagc
tcaccgagctcgcgcactggcagaaagcgaaaaaagtcaaaatcggagtggatgattcgt
tggatttttcaattgaagccctttttcacttggaaaactttgagatttccttgaataaat
tcacgaaaaatgatgctatcaagattagagatgttctcctgcaaaccgctcactttcaat
ccggaatcatcacattctccaaagatccaggaggcactaacatgttgaaggtgttcaacc
cgaaatattctggcggtgaaaatggtccaattatctataaaaccaaggattctcgcttcg
aaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTATTGCGGCCGGATGATGCGAA 640 139 455 Antisense
ATGATGCGAAGGCAGCGTTCTCTCA 23 47 470 Antisense
CGTTCTCTCACTTTAAGCCAGGAAA 352 247 485 Antisense
GTACCCAAAGTATCCCAGGTGTCCT 435 259 552 Antisense
AATGTACGAGCAGCTCACCGAGCTC 708 163 621 Antisense
CAATTGAAGCCCTTTTTCACTTGGA 653 173 704 Antisense
TAGAGATGTTCTCCTGCAAACCGCT 584 651 780 Antisense
AAACCGCTCACTTTCAATCCGGAAT 111 127 797 Antisense
AATCCGGAATCATCACATTCTCCAA 117 169 812 Antisense
GATCCAGGAGGCACTAACATGTTGA 611 415 838 Antisense
AAACCAAGGATTCTCGCTTCGAAAT 243 125 914 Antisense
Sequence Source Affymetrix Proprietary Database