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[184241_at]

Description W01B11.1 /REP_DB=WormBase Gene ID /WP=CE18305 /TR=O61215 /GB=AAK21474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 33.5
(3)
A 		10.8
(-2.1)
A 		7
(-3)
A 		15.4
(-1.1)
A 		27
B 35.5
(0.9)
A 		11.6
(-2.1)
A 		4.3
(-3)
A 		51.7
(3)
A 		47
C 0.9
(-3)
A 		14.2
(-0.7)
A 		18
(-0)
A 		35.5
(3)
A 		35
avr 23.3
(0.3) 		12.2
(-2.4) 		9.8
(-3) 		34.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 52.5
(0.2)
A 		22.6
(-1.7)
A 		1.6
(-3)
A 		68.7
(1.2)
A 		76.3
(1.7)
A 		97.5
(3)
M 		96
B 10.8
(-2.9)
A 		40.9
(-0.9)
A 		44.3
(-0.7)
A 		9
(-3)
A 		51
(-0.3)
A 		100.9
(3)
P 		92
C 14.2
(-2.7)
A 		37.7
(-1.3)
A 		41.1
(-1.1)
A 		9.7
(-3)
A 		72.8
(0.7)
A 		111.1
(3)
P 		101
avr 25.8
(-3) 		33.7
(-2.4) 		29
(-2.8) 		29.1
(-2.7) 		66.7
(0.2) 		103.2
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.2
(3)
A 		2.4
(-2.7)
A 		1.8
(-3)
A 		2.3
(-2.7)
A 		10
B 11.3
(3)
A 		2.9
(-1.9)
A 		1
(-3)
A 		11
(2.8)
A 		10
C 0.3
(-3)
A 		4.1
(0.8)
A 		6.3
(3)
A 		6
(2.7)
A 		6
avr 7.9
(3) 		3.1
(-2.9) 		3
(-3) 		6.4
(1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.7
(-0.6)
A 		8
(-1)
A 		0.3
(-3)
A 		17.4
(1.4)
A 		23
(2.8)
A 		23.7
(3)
M 		23
B 3.8
(-2.8)
A 		13.6
(-1.1)
A 		10.8
(-1.6)
A 		2.4
(-3)
A 		20.7
(0.1)
A 		37.6
(3)
P 		35
C 5.3
(-2.4)
A 		11.5
(-1.4)
A 		10.5
(-1.6)
A 		2
(-3)
A 		23.6
(0.7)
A 		37.2
(3)
P 		35
avr 6.3
(-3) 		11
(-1.9) 		7.2
(-2.8) 		7.3
(-2.8) 		22.4
(0.6) 		32.8
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.270
Sequence Type Exemplar sequence
Representative Public ID W01B11.1 NCBI
Target Description W01B11.1 /REP_DB=WormBase Gene ID /WP=CE18305 /TR=O61215 /GB=AAK21474.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058739 NCBI Caenorhabditis elegans W01B11.1 (W01B11.1) mRNA, complete cds. 11/11 None
SNAP00000027452 ENSEMBL cdna:SNAP chromosome:CEL140:I:3298453:3300491:1 11/11 None
GENEFINDER00000027458 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3299607:3300491:1 11/11 None
W01B11.1 ENSEMBL cdna:known chromosome:CEL140:I:3299607:3300491:1 gene:W01B11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3299606-3300491(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01B11.1
Entrez Gene 171904 Entrez gene
SwissProt O61215 EMBL-EBI
WormBase CE18305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491140 W01B11.1 [Caenorhabditis elegans] gb|AAK21474.1| Hypothetical protein W01B11.1 [Caenorhabditis elegans] 1.0E-17
blast NP_491140 W01B11.1 [Caenorhabditis elegans] gb|AAK21474.1| Hypothetical protein W01B11.1 [Caenorhabditis elegans] 4.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491140.1 1 105-127
W01B11.1 1 105-127
SNAP00000027452 1 107-129
GENEFINDER00000027458 1 105-127
Sequence
Target Sequence 
>C. ELEGANS:184241_AT
ttccacccgcgtcggaggcaaagaaattccaagtgcaaccggctaaaaaagcatcaaaat
cgaagagcaaatcgaaagactcatcgccaagcaacggaaaggagaagaagaagcgcacaa
agcgttcgggtggctccaaatcgaaagaatcttccgagccacctccatcattgtccgcct
ttaaatggcaaatggcattcagtgcatttcttgtctttatttcagttgctatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCACCCGCGTCGGAGGCAAAGAA 6 699 134 Antisense
GAAATTCCAAGTGCAACCGGCTAAA 402 361 156 Antisense
GTGCAACCGGCTAAAAAAGCATCAA 472 479 166 Antisense
GAGCAAATCGAAAGACTCATCGCCA 698 389 198 Antisense
AAGACTCATCGCCAAGCAACGGAAA 274 153 209 Antisense
GAAGAAGCGCACAAAGCGTTCGGGT 595 339 240 Antisense
TCGAAAGAATCTTCCGAGCCACCTC 555 599 274 Antisense
ATCATTGTCCGCCTTTAAATGGCAA 23 31 300 Antisense
GGCATTCAGTGCATTTCTTGTCTTT 388 537 327 Antisense
GTGCATTTCTTGTCTTTATTTCAGT 256 481 335 Antisense
TTGTCTTTATTTCAGTTGCTATCAC 602 707 344 Antisense
Sequence Source Affymetrix Proprietary Database