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[184240_at]

Description F53F10.1 /REP_DB=WormBase Gene ID /WP=CE10980 /TR=O01580 /GB=AAB52429.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 15      4grp_high_8_8 > 13      6grp_highest_nonorm > 52      6grp_total > 30      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2005
1 2 3 4 range
A 412.6
(-3)
P 		580.2
(-2.5)
P 		422.1
(-3)
P 		2374.6
(3)
P 		1962
B 369.9
(-3)
P 		592
(-2.1)
P 		387.3
(-2.9)
P 		1801
(3)
P 		1431
C 493.2
(-2.9)
P 		466
(-3)
P 		498.2
(-2.9)
P 		1842.8
(3)
P 		1377
avr 425.2
(-3) 		546.1
(-2.5) 		435.9
(-3) 		2006.1
(3) 		1581

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 580
1 2 3 4 5 6 range
A 580.2
(1.2)
P 		577.3
(1.2)
P 		668.5
(2.5)
P 		700.5
(3)
P 		504.6
(0.1)
P 		295.1
(-3)
P 		405
B 678.7
(1)
P 		777.3
(2.2)
P 		847.8
(3)
P 		733.4
(1.7)
P 		597.8
(0.1)
P 		333
(-3)
P 		515
C 517.5
(-0.9)
P 		874.6
(3)
P 		598
(-0)
P 		810.6
(2.3)
P 		444.4
(-1.7)
P 		323.8
(-3)
P 		551
avr 592.1
(0.8) 		743.1
(2.9) 		704.8
(2.4) 		748.2
(3) 		515.6
(-0.2) 		317.3
(-3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 150.2
(-2)
P 		126
(-2.6)
P 		110.4
(-3)
P 		347.6
(3)
P 		237
B 117.9
(-2.4)
P 		146.2
(-1.8)
P 		89.7
(-3)
P 		383.8
(3)
P 		294
C 163.2
(-2)
P 		134
(-3)
P 		173.6
(-1.7)
P 		310.7
(3)
P 		177
avr 143.8
(-2.5) 		135.4
(-2.7) 		124.6
(-3) 		347.4
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 107
(-1.4)
P 		205.3
(3)
P 		145.6
(0.3)
P 		177.7
(1.8)
P 		152.3
(0.6)
P 		71.8
(-3)
P 		134
B 236.2
(2)
P 		258.7
(3)
P 		205.9
(0.6)
P 		194.2
(0.1)
P 		242.9
(2.3)
P 		124.2
(-3)
P 		135
C 191.8
(0.2)
P 		266.9
(3)
P 		152.2
(-1.3)
P 		163
(-0.9)
P 		143.8
(-1.7)
P 		108.4
(-3)
P 		159
avr 178.3
(0.2) 		243.6
(3) 		167.9
(-0.2) 		178.3
(0.2) 		179.7
(0.3) 		101.5
(-3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.203
Sequence Type Exemplar sequence
Representative Public ID F53F10.1 NCBI
Target Description F53F10.1 /REP_DB=WormBase Gene ID /WP=CE10980 /TR=O01580 /GB=AAB52429.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058835 NCBI Caenorhabditis elegans F53F10.1 (F53F10.1) mRNA, complete cds. 11/11 None
SNAP00000021857 ENSEMBL cdna:SNAP chromosome:CEL140:I:3832007:3837750:-1 11/11 None
GENEFINDER00000021860 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3834163:3837750:-1 11/11 None
F53F10.1 ENSEMBL cdna:known chromosome:CEL140:I:3834126:3837750:-1 gene:F53F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3834162-3837750(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53F10.1
Entrez Gene 171959 Entrez gene
SwissProt O01580 EMBL-EBI
WormBase CE10980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52429 Hypothetical protein F53F10.1 [Caenorhabditis elegans] ref|NP_491236.1| F53F10.1 [Caenorhabditis elegans] 1.0E-126
blast AAB52429 Hypothetical protein F53F10.1 [Caenorhabditis elegans] ref|NP_491236.1| F53F10.1 [Caenorhabditis elegans] 1.0E-117
blast CAE66630 Hypothetical protein CBG11966 [Caenorhabditis briggsae] 1.0E-89
blast CAE66630 Hypothetical protein CBG11966 [Caenorhabditis briggsae] 5.0E-81
blast AAH65950 Hypothetical protein LOC325319 [Danio rerio] ref|NP_991115.1| hypothetical protein LOC325319 [Danio rerio] 7.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184240_AT
agaggcaagagatcgcgctgcacaaatggagaaaaccatgagatggtggtctagttgtac
agcagactggaggaatcgatggagtgctgttcgagacgagaggaatcgtgctcgtgaaga
agctgaaacattacgactcaattatgatcttctcctcgaagaaaagagatttctagcgga
acaactgtaccacgtcgactcggaatccgacgagccaaaactcgaaatctctcaaaaacc
agaaatcgacggaaccaaacgaaatgcagttgttcagacaattcattcaatttcatgtga
tcctccatcaattctagtcaaaagttattcggcggctcaaattgaagcagttcttcgtga
gccaagtgtcgatgagccgcccgttgagacgactaaatccgatataaatgaagaattgaa
ggctgaaaatgaattcctgaaggatcaggcgaatgagttgaacaagtgtcgagagaagat
tgaaaccgatggaaagacaatccaggatctccgtttacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGGCAAGAGATCGCGCTGCACAA 211 69 156 Antisense
GATGGAGTGCTGTTCGAGACGAGAG 578 407 233 Antisense
ACGACTCAATTATGATCTTCTCCTC 168 93 288 Antisense
CTAGCGGAACAACTGTACCACGTCG 651 223 328 Antisense
GTACCACGTCGACTCGGAATCCGAC 701 457 342 Antisense
ATTCAATTTCATGTGATCCTCCATC 28 13 440 Antisense
GATCCTCCATCAATTCTAGTCAAAA 113 417 454 Antisense
GAAGCAGTTCTTCGTGAGCCAAGTG 691 339 499 Antisense
GTGAGCCAAGTGTCGATGAGCCGCC 614 481 512 Antisense
CCGCCCGTTGAGACGACTAAATCCG 340 261 532 Antisense
GACAATCCAGGATCTCCGTTTACGA 358 365 651 Antisense
Sequence Source Affymetrix Proprietary Database