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[184239_at]

Description F27C1.11 /REP_DB=WormBase Gene ID /WP=CE09723 /TR=P91289 /GB=AAB37660.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 10.3
(3)
A 		5.7
(-2.9)
A 		5.6
(-3)
A 		7.9
(-0.1)
A 		5
B 6.2
(-3)
A 		6.4
(-2.9)
A 		11.4
(-1.1)
A 		22.7
(3)
A 		17
C 7.9
(-0.9)
A 		18
(3)
A 		2.3
(-3)
A 		8.8
(-0.5)
A 		16
avr 8.1
(-1.5) 		10
(0.2) 		6.4
(-3) 		13.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 44.4
(3)
A 		11
(-1.7)
A 		2.2
(-3)
A 		5.6
(-2.5)
A 		5.3
(-2.6)
A 		3.3
(-2.8)
A 		42
B 7.6
(3)
A 		4.4
(-2.3)
A 		5.2
(-1)
A 		6.7
(1.5)
A 		4.3
(-2.5)
A 		4
(-3)
A 		4
C 10.4
(3)
A 		7.6
(0.8)
A 		6.7
(0.1)
A 		5.1
(-1.1)
A 		2.7
(-3)
A 		3.3
(-2.5)
A 		8
avr 20.8
(3) 		7.7
(-1.5) 		4.7
(-2.6) 		5.8
(-2.2) 		4.1
(-2.8) 		3.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.8
(3)
A 		1.2
(-3)
A 		1.5
(-2.3)
A 		1.2
(-3)
A 		3
B 2
(-2.3)
A 		1.6
(-3)
A 		2.7
(-0.9)
A 		4.8
(3)
A 		3
C 2.6
(-0.5)
A 		5.2
(3)
A 		0.8
(-3)
A 		1.5
(-2)
A 		4
avr 2.8
(3) 		2.7
(2.5) 		1.7
(-3) 		2.5
(1.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.2
(3)
A 		3.9
(-0.4)
A 		0.5
(-3)
A 		1.4
(-2.3)
A 		1.6
(-2.1)
A 		0.8
(-2.8)
A 		8
B 2.6
(3)
A 		1.5
(-2.1)
A 		1.3
(-3)
A 		1.8
(-0.7)
A 		1.7
(-1.2)
A 		1.5
(-2.1)
A 		1
C 3.9
(3)
A 		2.3
(-0.2)
A 		1.7
(-1.4)
A 		1
(-2.8)
A 		0.9
(-3)
A 		1.1
(-2.6)
A 		3
avr 4.9
(3) 		2.6
(-0.6) 		1.2
(-2.8) 		1.4
(-2.5) 		1.4
(-2.5) 		1.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2281
Sequence Type Exemplar sequence
Representative Public ID F27C1.11 NCBI
Target Description F27C1.11 /REP_DB=WormBase Gene ID /WP=CE09723 /TR=P91289 /GB=AAB37660.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059198 NCBI Caenorhabditis elegans F27C1.11 (F27C1.11) mRNA, complete cds. 11/11 None
SNAP00000014506 ENSEMBL cdna:SNAP chromosome:CEL140:I:5434094:5442892:-1 11/11 None
GENEFINDER00000014521 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5435815:5446340:-1 11/11 None
F27C1.11 ENSEMBL cdna:known chromosome:CEL140:I:5436801:5442539:-1 gene:F27C1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5437419-5442539(-) 96.73 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.11
Entrez Gene 3565116 Entrez gene
SwissProt P91289 EMBL-EBI
WormBase CE30522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37660 Hypothetical protein F27C1.11 [Caenorhabditis elegans] ref|NP_491599.2| F27C1.11 [Caenorhabditis elegans] 0.0
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 0.0
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 1.0E-133
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Pfam IPR003533 EMBL-EBI Doublecortin 1.4E-9
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:184239_AT
gatccgtctcaagttccacgaattcaagttgatttcggaaacattggacggcttcaaaaa
gttcgatttgaaattcagccagccggtgatcagcctaactattatctggaatatgttgaa
gctcaggatcttgacacaagggaacgatgtgtattgatggtgaacaattggcttctgaag
gaagcaacgccgggatatcgaaagtttcagtcattcagggaaattgccatcttttcgaac
aattattatccagcttctatcagaacattcgaaggaacagttacatttggtgataagtca
cttattccacctggtgactctccaatcattctgcaattaatttcgcaaggaaaaaatcat
gatgatattccattggattcttctggatattttccaattgtgggaacaaaaatgaaaaat
ggaaccaccagctatggatacaaagttgaattggtcactcttgattctctgccaagaatt
agaattcttcccaatgtcactgatcttggaaaagatattcttgatggacttcatctttta
aaaggggtttttgacaacatgggcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGTCTCAAGTTCCACGAATTC 3 417 2305 Antisense
TGAAATTCAGCCAGCCGGTGATCAG 575 571 2373 Antisense
AGCCGGTGATCAGCCTAACTATTAT 233 83 2385 Antisense
GTTGAAGCTCAGGATCTTGACACAA 443 437 2419 Antisense
GAAGGAAGCAACGCCGGGATATCGA 537 331 2481 Antisense
GGAAATTGCCATCTTTTCGAACAAT 101 525 2523 Antisense
AACAATTATTATCCAGCTTCTATCA 237 135 2542 Antisense
CTTATTCCACCTGGTGACTCTCCAA 243 223 2605 Antisense
GAATTGGTCACTCTTGATTCTCTGC 687 323 2752 Antisense
ATTCTTCCCAATGTCACTGATCTTG 524 11 2788 Antisense
GGGGTTTTTGACAACATGGGCGACA 444 497 2848 Antisense
Sequence Source Affymetrix Proprietary Database