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[184237_at]

Description F43C11.8 /REP_DB=WormBase Gene ID /WP=CE23723 /TR=Q9U5C2 /GB=AAF16618.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.2
(-3)
A 		51.8
(3)
A 		22.8
(-0.5)
A 		3.3
(-2.9)
A 		50
B 4.6
(-2.8)
A 		3
(-3)
A 		43.6
(3)
A 		11.4
(-1.8)
A 		41
C 7.6
(-1.5)
A 		23.7
(3)
A 		10.7
(-0.6)
A 		2.2
(-3)
A 		22
avr 4.8
(-3) 		26.2
(3) 		25.7
(2.9) 		5.6
(-2.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 2.2
(-3)
A 		24.2
(-1.7)
A 		32.3
(-1.2)
A 		103.5
(3)
P 		42.1
(-0.6)
P 		57.6
(0.3)
P 		101
B 5.8
(-2.7)
A 		3.6
(-2.9)
A 		42.4
(-0.4)
A 		94.9
(3)
P 		69.2
(1.4)
P 		1.3
(-3)
A 		94
C 4.1
(-3)
A 		15.4
(-2.2)
A 		61.2
(1.3)
A 		84.7
(3)
P 		81.2
(2.7)
P 		6.5
(-2.8)
A 		81
avr 4
(-3) 		14.4
(-2.3) 		45.3
(-0.3) 		94.4
(3) 		64.2
(1) 		21.8
(-1.8) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.8
(-2.8)
A 		11.2
(3)
A 		6
(0.1)
A 		0.5
(-3)
A 		11
B 1.5
(-2.5)
A 		0.7
(-3)
A 		10.1
(3)
A 		2.4
(-1.9)
A 		9
C 2.5
(-1)
A 		6.8
(3)
A 		3.7
(0.1)
A 		0.4
(-3)
A 		6
avr 1.6
(-2.5) 		6.2
(2.6) 		6.6
(3) 		1.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.4
(-3)
A 		8.6
(-1.1)
A 		7
(-1.5)
A 		26.3
(3)
P 		12.7
(-0.2)
P 		14
(0.2)
P 		26
B 2
(-2.7)
A 		1.2
(-2.8)
A 		10.3
(-0.9)
A 		25.1
(2.3)
P 		28.1
(3)
P 		0.5
(-3)
A 		28
C 1.5
(-3)
A 		4.7
(-2.2)
A 		15.6
(0.4)
A 		17
(0.8)
P 		26.3
(3)
P 		2.2
(-2.8)
A 		25
avr 1.3
(-3) 		4.8
(-2) 		11
(-0.3) 		22.8
(3) 		22.4
(2.9) 		5.6
(-1.8) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4210
Sequence Type Exemplar sequence
Representative Public ID F43C11.8 NCBI
Target Description F43C11.8 /REP_DB=WormBase Gene ID /WP=CE23723 /TR=Q9U5C2 /GB=AAF16618.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061843 NCBI Caenorhabditis elegans F43C11.8 (F43C11.8) mRNA, complete cds. 11/11 None
SNAP00000012993 ENSEMBL cdna:SNAP chromosome:CEL140:II:2332459:2343866:1 11/11 None
GENEFINDER00000013015 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2332521:2337653:1 11/11 None
F43C11.8 ENSEMBL cdna:known chromosome:CEL140:II:2332521:2334271:1 gene:F43C11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2332519-2334270(+) 97.94 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.8
Entrez Gene 173590 Entrez gene
SwissProt Q9U5C2 EMBL-EBI
WormBase CE23723 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF16618 Hypothetical protein F43C11.8 [Caenorhabditis elegans] ref|NP_494244.1| F43C11.8 [Caenorhabditis elegans] 0.0
blast AAF16618 Hypothetical protein F43C11.8 [Caenorhabditis elegans] ref|NP_494244.1| F43C11.8 [Caenorhabditis elegans] 1.0E-162
blast AAF16618 Hypothetical protein F43C11.8 [Caenorhabditis elegans] ref|NP_494244.1| F43C11.8 [Caenorhabditis elegans] 1.0E-161
blast AAF16617 Hypothetical protein F43C11.7 [Caenorhabditis elegans] ref|NP_494245.1| F43C11.7 [Caenorhabditis elegans] 1.0E-154
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 1.0E-136
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 1.0E-133
blast B88072 protein ZK1240.2 [imported] - Caenorhabditis elegans 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.9E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.9E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012993 1 482-504
Sequence
Target Sequence 
>C. ELEGANS:184237_AT
atgtgccgtacctgcgaagagtttggagctcacgccggacacaatcgaggcctactacaa
tcagaagcggcaaagttgagacagtttctgagcgggaagctttcaagatccgaagacctg
gcaagtaaaattgatgcgaatatcgaaaagatcggaacagctcagctaacaaatctcgac
gatggggaggtatttcaagagaaaaaggtttcgataatagccttctacgcttcaatacga
gaaaccttggatgctctcgaaaacgatgctcttgcgacgcttcagaacatcgcggaaact
aactttttcacgaacgacctgctcatcgcagagctatcggaatccttgaaccggcaaaag
cgaaaaagtgcggagctgaagctgtttatgaaaatgagcaatgcagatttgctcgcggtg
aattctgcgctggaagtgagcagcgagaatgagctctggactgaatttgctgatgttgag
cctgaagtttttgacgcagcactgatttttccagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCCGTACCTGCGAAGAGTTTG 127 49 400 Antisense
GACACAATCGAGGCCTACTACAATC 139 367 437 Antisense
ACAGCTCAGCTAACAAATCTCGACG 187 107 556 Antisense
TAGCCTTCTACGCTTCAATACGAGA 511 641 617 Antisense
GAAACCTTGGATGCTCTCGAAAACG 354 359 640 Antisense
CGAAAACGATGCTCTTGCGACGCTT 258 253 657 Antisense
TAACTTTTTCACGAACGACCTGCTC 291 639 699 Antisense
CGACCTGCTCATCGCAGAGCTATCG 240 251 714 Antisense
GAGCTATCGGAATCCTTGAACCGGC 86 387 730 Antisense
TGCTCGCGGTGAATTCTGCGCTGGA 282 581 809 Antisense
GACGCAGCACTGATTTTTCCAGAGA 672 379 892 Antisense
Sequence Source Affymetrix Proprietary Database