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[184236_at]

Description T24C12.4 /REP_DB=WormBase Gene ID /WP=CE05004 /TR=Q22723 /GB=AAA82390.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 35.5
(-3)
A 		368.8
(3)
P 		322.7
(2.2)
P 		116.7
(-1.5)
A 		333
B 30.9
(-3)
A 		293.5
(2.7)
P 		309.3
(3)
P 		55.4
(-2.5)
A 		278
C 22.8
(-3)
A 		357
(3)
P 		295
(1.9)
P 		121.6
(-1.2)
A 		334
avr 29.7
(-3) 		339.8
(3) 		309
(2.4) 		97.9
(-1.7) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 138.2
(-3)
A 		236.8
(1.3)
P 		186.5
(-0.9)
A 		274.8
(3)
P 		233.7
(1.2)
P 		250.2
(1.9)
P 		137
B 108.8
(-3)
A 		294.5
(3)
P 		166.6
(-1.1)
A 		250.5
(1.6)
P 		186.4
(-0.5)
P 		187.5
(-0.5)
P 		186
C 75.9
(-3)
A 		270.8
(3)
P 		133
(-1.2)
P 		194.2
(0.6)
P 		217.4
(1.4)
P 		252.2
(2.4)
P 		195
avr 107.6
(-3) 		267.4
(3) 		162
(-1) 		239.8
(2) 		212.5
(0.9) 		230
(1.6) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 12.9
(-3)
A 		80.1
(2.6)
P 		84.4
(3)
P 		17.1
(-2.6)
A 		72
B 9.9
(-3)
A 		72.5
(3)
P 		71.7
(2.9)
P 		11.8
(-2.8)
A 		63
C 7.5
(-3)
A 		102.6
(3)
P 		102.8
(3)
P 		20.5
(-2.2)
A 		95
avr 10.1
(-3) 		85.1
(2.9) 		86.3
(3) 		16.5
(-2.5) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 25.5
(-3)
A 		84.2
(3)
P 		40.6
(-1.5)
A 		69.7
(1.5)
P 		70.5
(1.6)
P 		60.9
(0.6)
P 		59
B 37.9
(-3)
A 		98
(3)
P 		40.4
(-2.8)
A 		66.4
(-0.2)
P 		75.7
(0.8)
P 		69.9
(0.2)
P 		60
C 28.1
(-3)
A 		82.6
(2.8)
P 		33.9
(-2.4)
P 		39.1
(-1.8)
P 		70.3
(1.5)
P 		84.4
(3)
P 		56
avr 30.5
(-3) 		88.3
(3) 		38.3
(-2.2) 		58.4
(-0.1) 		72.2
(1.3) 		71.7
(1.3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18138
Sequence Type Exemplar sequence
Representative Public ID T24C12.4 NCBI
Target Description T24C12.4 /REP_DB=WormBase Gene ID /WP=CE05004 /TR=Q22723 /GB=AAA82390.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076006 NCBI Caenorhabditis elegans T24C12.4 (T24C12.4) mRNA, complete cds. 11/11 None
T24C12.4 ENSEMBL cdna:known chromosome:CEL140:X:2204234:2205056:-1 gene:T24C12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2204233-2205056(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C12.4
Entrez Gene 188848 Entrez gene
SwissProt Q22723 EMBL-EBI
WormBase CE05004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82390 Hypothetical protein T24C12.4 [Caenorhabditis elegans] ref|NP_508407.1| T24C12.4 [Caenorhabditis elegans] 1.0E-129
blast CAE68339 Hypothetical protein CBG14064 [Caenorhabditis briggsae] 1.0E-113
blast AAY86225 Hypothetical protein C25F6.8 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508407.1 1 32-51
T24C12.4 1 32-51
Sequence
Target Sequence 
>C. ELEGANS:184236_AT
gagcaatgttccgtcgacttgggacattctcaattacaccacaattgagcgtcatgtgga
agtacgcggttgtcttttctgctatttttctcatccatattgtggatgctggcttccaaa
tttcacagctcaaaccattgtacaaagaggataatattactatcagtgagctttccacag
cacttggagcagcctttccaccatgttgctccgatatcatttcgagcattgcctgtagaa
gacttcaacagcacaatccttcgaagttcctagacagatgcgctactgacgctgatttct
ctttgatccaatgttgtaacacttgtggaatggaaagcgctgccgatagatacgagctca
ttttccaagccggccacaaatccaaccaatgtttcgaccgccatggatcagagttctgca
agcgatttttgaagaaggaggatgtttggggaaagtctcaatggtcttgcgacggatcga
ctgcacatttggcgttccgcatttgcagaaaaacttgcaacttttgccgcagagatattt
atcgcacaccgctcggtcgatttgagccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAATGTTCCGTCGACTTGGGAC 319 387 62 Antisense
GGGACATTCTCAATTACACCACAAT 48 495 82 Antisense
GGAAGTACGCGGTTGTCTTTTCTGC 704 525 119 Antisense
GGATGCTGGCTTCCAAATTTCACAG 502 513 165 Antisense
GCTTTCCACAGCACTTGGAGCAGCC 15 305 231 Antisense
CCACCATGTTGCTCCGATATCATTT 29 275 259 Antisense
GCACAATCCTTCGAAGTTCCTAGAC 272 317 312 Antisense
GATGCGCTACTGACGCTGATTTCTC 376 415 338 Antisense
GTTTCGACCGCCATGGATCAGAGTT 11 451 452 Antisense
GGATCGACTGCACATTTGGCGTTCC 492 511 535 Antisense
ACACCGCTCGGTCGATTTGAGCCAG 68 109 607 Antisense
Sequence Source Affymetrix Proprietary Database