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[184235_at]

Description Y56A3A.16 /REP_DB=WormBase Gene ID /WP=CE22583 /TR=Q9U242 /GB=CAB60497.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 36.9
(-3)
A 		80.5
(0.5)
A 		48.8
(-2.1)
A 		112.3
(3)
A 		75
B 72.7
(-0.7)
A 		99.8
(3)
A 		91.7
(1.9)
A 		56
(-3)
A 		44
C 38.2
(-2.4)
A 		29.1
(-3)
A 		60.3
(-0.8)
A 		113.4
(3)
A 		84
avr 49.3
(-3) 		69.8
(-0.2) 		66.9
(-0.6) 		93.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 53.7
(-3)
A 		72.5
(-0.5)
A 		54.9
(-2.8)
A 		54.3
(-2.9)
A 		87.2
(1.5)
A 		98.4
(3)
P 		45
B 89.1
(2.8)
A 		64.9
(0.4)
A 		72.9
(1.2)
A 		30.4
(-3)
A 		90.8
(3)
A 		86.1
(2.5)
P 		60
C 9
(-3)
A 		40.7
(-0.3)
A 		66.6
(1.9)
A 		62.8
(1.6)
A 		39.5
(-0.4)
A 		79.1
(3)
P 		70
avr 50.6
(-2.8) 		59.4
(-1.4) 		64.8
(-0.6) 		49.2
(-3) 		72.5
(0.6) 		87.9
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.4
(-2.2)
A 		17.5
(3)
A 		12.8
(-3)
A 		16.4
(1.6)
A 		5
B 23.2
(2.3)
A 		24.7
(3)
A 		21.2
(1.4)
A 		11.9
(-3)
A 		13
C 12.7
(-1)
A 		8.4
(-3)
A 		21
(3)
A 		19.1
(2.1)
A 		13
avr 16.4
(-1.6) 		16.9
(-0.4) 		18.3
(3) 		15.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.9
(-3)
A 		25.8
(2.8)
A 		12
(-2.2)
A 		13.8
(-1.6)
A 		26.3
(3)
A 		23.9
(2.1)
P 		16
B 31
(1.8)
A 		21.6
(-0.2)
A 		17.7
(-1)
A 		8
(-3)
A 		36.9
(3)
A 		32.1
(2)
P 		29
C 3.3
(-3)
A 		12.4
(-0.6)
A 		17
(0.5)
A 		12.6
(-0.6)
A 		12.8
(-0.5)
A 		26.5
(3)
P 		23
avr 14.7
(-1.8) 		19.9
(0.1) 		15.6
(-1.5) 		11.5
(-3) 		25.3
(2.2) 		27.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7619
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.16 NCBI
Target Description Y56A3A.16 /REP_DB=WormBase Gene ID /WP=CE22583 /TR=Q9U242 /GB=CAB60497.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067147 NCBI Caenorhabditis elegans Y56A3A.16 (Y56A3A.16) mRNA, complete cds. 11/11 None
GENEFINDER00000035212 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11910335:11914190:-1 11/11 None
SNAP00000035196 ENSEMBL cdna:SNAP chromosome:CEL140:III:11911024:11915586:-1 11/11 None
Y56A3A.16 ENSEMBL cdna:known chromosome:CEL140:III:11910335:11914190:-1 gene:Y56A3A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11911057-11914186(-) 93.87 94.09
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.16
Entrez Gene 190329 Entrez gene
SwissProt Q9U242 EMBL-EBI
WormBase CE22583 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60497 Hypothetical protein Y56A3A.16 [Caenorhabditis elegans] ref|NP_499548.1| Y56A3A.16 [Caenorhabditis elegans] 0.0
blast CAE67736 Hypothetical protein CBG13311 [Caenorhabditis briggsae] 0.0
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 3.0E-64
blast NP_780718 hypothetical protein LOC241075 [Mus musculus] gb|AAH63098.1| RIKEN cDNA 9430067K14 gene [Mus musculus] dbj|BAC28895.1| unnamed protein product [Mus musculus] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 3.8E-16
Sequence
Target Sequence 
>C. ELEGANS:184235_AT
gctgttcgagaatcgccagtgttcagaatacgcgatttgccgggagatttggtgaagaag
aacaaggcactgagggcagtggtcgagttgcgacagaaattgaagcatatggaaggattt
attaagatttgcattgacgcttccaatcaagtcttcgaattcgggaatttgagcacaatg
ttcgcaagtatcgatcgatatcttcttgaacatgatgatctattctcgttgaatgatttg
cagcgaatttataataaagatctactctccctgctcgaaccacttgcaaaaagagcacgc
gagcacattatccactgtaaaaagtgtcgactacaagctccagtgtgtgttcgctgcaat
gatatgactgatcggctattcgcattcgaagaacgagcagtttcacgatgtgaaggatgt
ggtcatctatctcattctccaaaatgtccgagaagagacgttccacgtgatactcactgt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTTCGAGAATCGCCAGTGTTCA 298 295 1243 Antisense
GAATACGCGATTTGCCGGGAGATTT 249 327 1268 Antisense
TGACGCTTCCAATCAAGTCTTCGAA 6 569 1377 Antisense
ATAATAAAGATCTACTCTCCCTGCT 430 25 1493 Antisense
CCCTGCTCGAACCACTTGCAAAAAG 326 259 1511 Antisense
ACGCGAGCACATTATCCACTGTAAA 460 91 1539 Antisense
AAGTGTCGACTACAAGCTCCAGTGT 440 159 1564 Antisense
ACAAGCTCCAGTGTGTGTTCGCTGC 697 113 1575 Antisense
ATGACTGATCGGCTATTCGCATTCG 119 45 1606 Antisense
TGTGGTCATCTATCTCATTCTCCAA 483 555 1660 Antisense
GACGTTCCACGTGATACTCACTGTC 115 379 1699 Antisense
Sequence Source Affymetrix Proprietary Database