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[184232_at]

Description Y17G9A.3 /REP_DB=WormBase Gene ID /WP=CE24177 /TR=Q9N485 /GB=AAF60439.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 12.9
(-3)
A 		53.4
(-0.1)
A 		38.3
(-1.2)
A 		97.4
(3)
P 		85
B 5.1
(-3)
A 		36.8
(0.5)
A 		6.3
(-2.9)
A 		59.9
(3)
P 		55
C 33.6
(-3)
A 		45.6
(-2)
A 		44
(-2.1)
A 		104.7
(3)
A 		71
avr 17.2
(-3) 		45.3
(-0.6) 		29.5
(-1.9) 		87.3
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 51.5
(2.3)
A 		37.5
(0.7)
A 		36.8
(0.6)
A 		57.9
(3)
A 		28.7
(-0.3)
A 		4.4
(-3)
A 		54
B 38.8
(1.4)
A 		16.9
(-1.3)
A 		51.8
(3)
A 		44.2
(2.1)
A 		43.1
(1.9)
A 		3
(-3)
A 		49
C 5.2
(-2.6)
A 		32.1
(1.8)
A 		37.8
(2.7)
A 		39.6
(3)
A 		2.8
(-3)
A 		35
(2.3)
A 		37
avr 31.8
(0.2) 		28.8
(-0.3) 		42.1
(2.1) 		47.2
(3) 		24.9
(-1) 		14.1
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.7
(-3)
A 		11.6
(1.3)
A 		10
(0.3)
A 		14.3
(3)
P 		10
B 1.6
(-2.9)
A 		9.1
(1)
A 		1.5
(-3)
A 		12.8
(3)
P 		11
C 11.1
(-3)
A 		13.1
(-1.2)
A 		15.3
(0.8)
A 		17.7
(3)
A 		7
avr 5.8
(-3) 		11.3
(0.6) 		8.9
(-1) 		14.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(0.7)
A 		13.3
(2.4)
A 		8
(0)
A 		14.7
(3)
A 		8.7
(0.4)
A 		1.1
(-3)
A 		14
B 13.5
(1.5)
A 		5.6
(-1.4)
A 		12.6
(1.2)
A 		11.7
(0.9)
A 		17.5
(3)
A 		1.1
(-3)
A 		16
C 1.9
(-2.4)
A 		9.8
(1.9)
A 		9.6
(1.8)
A 		8
(0.9)
A 		0.9
(-3)
A 		11.7
(3)
A 		11
avr 8.3
(0.2) 		9.6
(1.3) 		10.1
(1.8) 		11.5
(3) 		9
(0.8) 		4.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11068
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.3 NCBI
Target Description Y17G9A.3 /REP_DB=WormBase Gene ID /WP=CE24177 /TR=Q9N485 /GB=AAF60439.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068256 NCBI Caenorhabditis elegans Y17G9A.3 (Y17G9A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000012355 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4856881:4861396:-1 11/11 None
Y17G9A.3 ENSEMBL cdna:known chromosome:CEL140:IV:4856881:4858663:-1 gene:Y17G9A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4856886-4858669(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9A.3
Entrez Gene 189460 Entrez gene
SwissProt Q9N485 EMBL-EBI
WormBase CE24177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 1.0E-164
blast NP_500657 Y17G9A.3 [Caenorhabditis elegans] gb|AAF60439.1| Hypothetical protein Y17G9A.3 [Caenorhabditis elegans] 1.0E-133
blast NP_500657 Y17G9A.3 [Caenorhabditis elegans] gb|AAF60439.1| Hypothetical protein Y17G9A.3 [Caenorhabditis elegans] 1.0E-125
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 9.0E-86
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 3.0E-54
blast NP_001022111 F22E5.21 [Caenorhabditis elegans] gb|AAY55841.1| Hypothetical protein F22E5.21 [Caenorhabditis elegans] 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 4.6E-5
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 4.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500657.1 1 17-39
Y17G9A.3 1 17-39
GENEFINDER00000012355 3 17-39,237-259,432-454
Sequence
Target Sequence 
>C. ELEGANS:184232_AT
gcattatcctcatttggactcacatttttcagtcttcaacggatagcaagtgttgaaagt
tcaaaactaccattgaaattaaaatatatttggccgaaaaatgtgaagaaaattgtggat
tatgtgattgaaaatgatatgcatgtgacaaatgatgacagggcagttttaatcaaaact
gagcttatgcggtttgatacgaccgatgtcttctatataatggtttatgataataaggga
gaaacggaaagtaattccttttatggaaatgctgaacaatatataacttcgtacaatcct
ggaaaatgcaatattgtcatttaccgtagtcattattggagatcaacttctaaaagagcc
aagaataatatcgaaaatgaagttaaaattatttgcgccgaagaactcaaaaagcagcca
gatggcctggaaaatctcatcaaaaatattgaagacgctcgttttataggattaattgaa
aaaaatagagcagtttcaattcgatcggccaacagtttcggaagagcgcgggggcctgga
tggtggaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTATCCTCATTTGGACTCACAT 25 309 94 Antisense
CTCACATTTTTCAGTCTTCAACGGA 58 229 112 Antisense
ACTGAGCTTATGCGGTTTGATACGA 432 95 271 Antisense
GGTTTGATACGACCGATGTCTTCTA 58 507 284 Antisense
ATAACTTCGTACAATCCTGGAAAAT 697 1 376 Antisense
AAATTATTTGCGCCGAAGAACTCAA 450 115 479 Antisense
AGCCAGATGGCCTGGAAAATCTCAT 121 83 509 Antisense
GAAGACGCTCGTTTTATAGGATTAA 441 339 544 Antisense
AGAGCAGTTTCAATTCGATCGGCCA 22 71 580 Antisense
GATCGGCCAACAGTTTCGGAAGAGC 290 417 596 Antisense
CGCGGGGGCCTGGATGGTGGAATAA 230 253 620 Antisense
Sequence Source Affymetrix Proprietary Database