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[184231_at]

Description F33E11.2 /REP_DB=WormBase Gene ID /WP=CE28293 /TR=O61852 /GB=AAC17543.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 39.9
(-3)
A 		85.7
(-0.9)
A 		145.9
(2)
A 		168.1
(3)
A 		128
B 55.1
(-2.9)
A 		86.1
(-1.8)
A 		52.6
(-3)
A 		223.9
(3)
A 		171
C 64
(-1.6)
A 		29.7
(-3)
A 		111
(0.4)
A 		172.3
(3)
A 		143
avr 53
(-3) 		67.2
(-2.4) 		103.2
(-0.8) 		188.1
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 737
1 2 3 4 5 6 range
A 25.7
(-2.9)
A 		9.9
(-3)
A 		36.8
(-2.8)
A 		139.7
(-1.9)
A 		482.7
(1.2)
P 		691.7
(3)
P 		682
B 23.8
(-3)
A 		27.9
(-3)
A 		35
(-2.9)
A 		159.1
(-1.9)
A 		467.5
(0.7)
P 		746.5
(3)
P 		723
C 26.9
(-3)
A 		47.4
(-2.8)
A 		68
(-2.5)
A 		161.4
(-1.5)
A 		444.3
(1.7)
P 		563.8
(3)
P 		537
avr 25.5
(-3) 		28.4
(-3) 		46.6
(-2.8) 		153.4
(-1.8) 		464.8
(1.1) 		667.3
(3) 		642
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 14.5
(-3)
A 		18.6
(-2)
A 		38.1
(3)
A 		24.6
(-0.4)
A 		24
B 17.6
(-2.1)
A 		21.3
(-1.5)
A 		12.2
(-3)
A 		47.7
(3)
A 		36
C 21.2
(-0.5)
A 		8.5
(-3)
A 		38.7
(3)
A 		29.1
(1.1)
A 		30
avr 17.8
(-2.4) 		16.1
(-3) 		29.7
(1.6) 		33.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 4.7
(-3)
A 		3.5
(-3)
A 		8
(-2.8)
A 		35.4
(-1.8)
A 		145.7
(2.2)
P 		168.4
(3)
P 		165
B 8.3
(-3)
A 		9.3
(-3)
A 		8.5
(-3)
A 		42.1
(-2.2)
A 		189.9
(1)
P 		278.3
(3)
P 		270
C 10
(-3)
A 		14.5
(-2.8)
A 		17.3
(-2.8)
A 		32.5
(-2.2)
A 		143.8
(1.5)
P 		188.7
(3)
P 		179
avr 7.7
(-3) 		9.1
(-3) 		11.3
(-2.9) 		36.7
(-2.1) 		159.8
(1.5) 		211.8
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14852
Sequence Type Exemplar sequence
Representative Public ID F33E11.2 NCBI
Target Description F33E11.2 /REP_DB=WormBase Gene ID /WP=CE28293 /TR=O61852 /GB=AAC17543.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070769(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070769 NCBI Caenorhabditis elegans F33E11.2 (F33E11.2) mRNA, complete cds. 9/11 A 
SNAP00000030180 ENSEMBL cdna:SNAP chromosome:CEL140:V:297778:312685:1 9/11 None
GENEFINDER00000030188 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:297778:299711:1 11/11 None
F33E11.2 ENSEMBL cdna:known chromosome:CEL140:V:296427:299769:1 gene:F33E11.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:296426-298774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E11.2
Entrez Gene 178555 Entrez gene
SwissProt O61852 EMBL-EBI
WormBase CE28293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-170
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-117
blast AAC17543 Hypothetical protein F33E11.2 [Caenorhabditis elegans] ref|NP_503170.1| F33E11.2 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:184231_AT
caggcttccgggctatttgaaaatgaaaaattctcaattttctgtccagtcgacaacatc
tcctatccgggtctgatcagattctgcgggaaagttcgtaataatctcgggaacaactac
aacatccaatgcgacatcttccaaatgtgccagttcggcgctcgctcgttgggctccgtt
cacaacaccatcaccgtcaccgtcgcagctgctgcaccgattccgaatctcgttccacgt
ggcatcttggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnaaagtcctgaacctgcaaaaattcatcgatgcctatcagcctgtccagtcgact
ggatatccgattggcacaccagcagctgctgcagcagtcgaaaaggaatctgctgctcct
gttgtccccgagaatgctgagaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGCTTCCGGGCTATTTGAAAATG 76 203 538 Antisense
TTCTCAATTTTCTGTCCAGTCGACA 183 691 568 Antisense
CTCCTATCCGGGTCTGATCAGATTC 35 235 597 Antisense
ACAACATCCAATGCGACATCTTCCA 216 113 656 Antisense
ATCTTCCAAATGTGCCAGTTCGGCG 466 27 673 Antisense
TGCACCGATTCCGAATCTCGTTCCA 522 575 750 Antisense
AAATTCATCGATGCCTATCAGCCTG 62 117 862 Antisense
TATCAGCCTGTCCAGTCGACTGGAT 144 657 877 Antisense
TGGATATCCGATTGGCACACCAGCA 67 551 897 Antisense
AAAGGAATCTGCTGCTCCTGTTGTC 342 121 939 Antisense
CTGTTGTCCCCGAGAATGCTGAGAA 422 239 956 Antisense
Sequence Source Affymetrix Proprietary Database