[Home] | [Total List]

[184230_at] 7TM chemoreceptor, srx family

Description F41G3.11 /REP_DB=WormBase Gene ID /WP=CE01284 /TR=Q20290 /GB=AAA81108.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 75      4grp_high_8_8 > 06      6grp_total > 77      4grp_total > 02      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 48.4
(-2.7)
P 		34.1
(-3)
A 		40.2
(-2.9)
P 		324
(3)
P 		290
B 67.4
(-2.4)
P 		31.7
(-3)
P 		55.3
(-2.6)
P 		412.7
(3)
P 		381
C 39.6
(-2.9)
P 		75.7
(-2.4)
P 		36.1
(-3)
A 		439
(3)
P 		403
avr 51.8
(-2.9) 		47.2
(-2.9) 		43.9
(-3) 		391.9
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 53.8
(-0.5)
M 		41.5
(-1.7)
P 		28.9
(-3)
A 		59.9
(0.1)
P 		79
(2)
P 		88.8
(3)
P 		60
B 34
(-3)
P 		64.4
(0.2)
P 		51.1
(-1.2)
P 		58.8
(-0.4)
P 		42.5
(-2.1)
P 		91.3
(3)
P 		57
C 27.8
(-3)
P 		48.8
(-1.3)
P 		55.1
(-0.8)
P 		43.9
(-1.7)
M 		33.8
(-2.5)
P 		101.5
(3)
P 		74
avr 38.5
(-3) 		51.6
(-1.6) 		45
(-2.3) 		54.2
(-1.3) 		51.8
(-1.6) 		93.9
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 17.6
(-1.5)
P 		7.4
(-3)
A 		10.5
(-2.5)
P 		47.4
(3)
P 		40
B 21.5
(-2)
P 		7.8
(-3)
P 		12.8
(-2.6)
P 		87.9
(3)
P 		80
C 13.1
(-3)
P 		21.8
(-2.1)
P 		12.6
(-3)
A 		74
(3)
P 		61
avr 17.4
(-2.4) 		12.3
(-3) 		12
(-3) 		69.8
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 9.9
(-1.8)
M 		14.8
(-0.1)
P 		6.3
(-3)
A 		15.2
(0.1)
P 		23.8
(3)
P 		21.6
(2.2)
P 		18
B 11.8
(-3)
P 		21.4
(-0.4)
P 		12.4
(-2.8)
P 		15.6
(-2)
P 		17.2
(-1.5)
P 		34
(3)
P 		22
C 10.3
(-2.6)
P 		14.9
(-1.5)
P 		14
(-1.8)
P 		8.8
(-3)
M 		10.9
(-2.5)
P 		34
(3)
P 		25
avr 10.7
(-3) 		17
(-1) 		10.9
(-2.9) 		13.2
(-2.2) 		17.3
(-0.9) 		29.9
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4221
Sequence Type Exemplar sequence
Representative Public ID F41G3.11 NCBI
Target Description F41G3.11 /REP_DB=WormBase Gene ID /WP=CE01284 /TR=Q20290 /GB=AAA81108.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062979 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-95) (srx-95) mRNA, complete cds. 11/11 None
SNAP00000017946 ENSEMBL cdna:SNAP chromosome:CEL140:II:6753060:6754705:-1 10/11 None
GENEFINDER00000017958 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6753060:6754705:-1 11/11 None
F41G3.11 ENSEMBL cdna:known chromosome:CEL140:II:6753060:6754705:-1 gene:F41G3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6753055-6754342(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-95
Ensembl F41G3.11
Entrez Gene 185633 Entrez gene
SwissProt Q20290 EMBL-EBI
WormBase CE36543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81108 Serpentine receptor, class x protein 95 [Caenorhabditis elegans] ref|NP_495380.2| Serpentine Receptor, class X family member (srx-95) [Caenorhabditis elegans] 1.0E-162
blast CAE65960 Hypothetical protein CBG11143 [Caenorhabditis briggsae] 1.0E-124
blast AAA81108 Serpentine receptor, class x protein 95 [Caenorhabditis elegans] ref|NP_495380.2| Serpentine Receptor, class X family member (srx-95) [Caenorhabditis elegans] 1.0E-103
blast CAE65960 Hypothetical protein CBG11143 [Caenorhabditis briggsae] 2.0E-80
blast AAB52928 Serpentine receptor, class x protein 97 [Caenorhabditis elegans] ref|NP_494609.1| Serpentine Receptor, class X family member (srx-97) [Caenorhabditis elegans] 3.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495380.2 7 20-42,49-71,91-113,133-150,184-206,227-246,256-278
F41G3.11 7 20-42,49-71,91-113,133-150,184-206,227-246,256-278
SNAP00000017946 4 21-43,72-91,136-158,173-195
GENEFINDER00000017958 7 20-42,49-71,91-113,133-150,184-206,227-246,256-278
Sequence
Target Sequence 
>C. ELEGANS:184230_AT
gaaccttaacgcaatgctacctggcattgaacagatttgcaacaatatgctttgttggca
gtgtgaaaagagaaaatgctgatatgattgcactgggagtattaacttcatggtttgcag
caattatttggacacttttaggttatccagaatgcacttgctacttctcatctgaacacc
tcactttcatatacttcgacgattgccacatcgcaaactaccaacttcagctctattgtg
cctttgttctaatgatgattttcaatatgctcaacgtcatcagtttcctcattatttgtt
gtggcggagcgaaatctgtaagcttctcatgccgtaatgcaccacgtagaaaacaaagaa
acgcaaaaatgtttattcagtgtatggctcaatcattgctctatatcatagatgtcttct
tgatctcatctcttcattctggatcattcggagacattcttgttgcgcttccttctatgg
cattcttggctctgttcgatggattaatcatgcttctgtgcaataatgacattcagccag
cttgtattgcttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTTAACGCAATGCTACCTGGC 19 345 56 Antisense
AGAATGCACTTGCTACTTCTCATCT 428 75 204 Antisense
AACACCTCACTTTCATATACTTCGA 184 137 230 Antisense
TACTTCGACGATTGCCACATCGCAA 113 645 247 Antisense
ACATCGCAAACTACCAACTTCAGCT 290 105 263 Antisense
ACTTCAGCTCTATTGTGCCTTTGTT 194 103 279 Antisense
TATGCTCAACGTCATCAGTTTCCTC 553 657 321 Antisense
GTAAGCTTCTCATGCCGTAATGCAC 202 463 373 Antisense
ATCTCATCTCTTCATTCTGGATCAT 289 33 478 Antisense
TTCTATGGCATTCTTGGCTCTGTTC 331 691 528 Antisense
ATTCAGCCAGCTTGTATTGCTTCGA 476 11 586 Antisense
Sequence Source Affymetrix Proprietary Database