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[184224_at]

Description Y45F10D.6 /REP_DB=WormBase Gene ID /WP=CE16644 /TR=O62476 /GB=CAA16381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 59      4grp_high_8_8 > 12      6grp_total > 46      4grp_total > 12      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 123.2
(-1.7)
P 		106.1
(-2.3)
M 		87
(-3)
P 		260.4
(3)
P 		173
B 103.9
(-2)
P 		96.2
(-2.2)
P 		66.9
(-3)
P 		280
(3)
P 		213
C 136.5
(-0.4)
P 		53.4
(-2.9)
M 		48.8
(-3)
P 		254.1
(3)
P 		205
avr 121.2
(-1.4) 		85.2
(-2.5) 		67.6
(-3) 		264.8
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 109
(3)
P 		77.6
(-0.3)
P 		51.6
(-3)
P 		74.5
(-0.6)
P 		79.3
(-0.1)
P 		84.1
(0.4)
P 		57
B 54.3
(-1.6)
P 		114.2
(3)
P 		36.4
(-3)
M 		54.2
(-1.6)
P 		48.4
(-2.1)
P 		86.5
(0.9)
P 		78
C 61.8
(-0.8)
P 		85.5
(1.3)
P 		37.3
(-3)
A 		52.4
(-1.7)
P 		60
(-1)
P 		104.6
(3)
P 		67
avr 75
(0.9) 		92.4
(3) 		41.8
(-3) 		60.4
(-0.8) 		62.6
(-0.5) 		91.7
(2.9) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 44.9
(3)
P 		23
(-2.9)
M 		22.7
(-3)
P 		38.1
(1.2)
P 		22
B 33.1
(-0.6)
P 		23.8
(-1.9)
P 		15.5
(-3)
P 		59.7
(3)
P 		44
C 45.2
(3)
P 		15.3
(-3)
M 		17
(-2.7)
P 		42.8
(2.5)
P 		30
avr 41.1
(1.8) 		20.7
(-2.5) 		18.4
(-3) 		46.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 20.1
(0.3)
P 		27.6
(3)
P 		11.2
(-3)
P 		18.9
(-0.2)
P 		23.9
(1.6)
P 		20.5
(0.4)
P 		16
B 18.9
(-0.9)
P 		38
(3)
P 		8.8
(-3)
M 		14.3
(-1.9)
P 		19.7
(-0.8)
P 		32.3
(1.8)
P 		29
C 22.9
(0.2)
P 		26.1
(0.9)
P 		9.5
(-3)
A 		10.5
(-2.8)
P 		19.4
(-0.7)
P 		35
(3)
P 		26
avr 20.6
(0.1) 		30.6
(3) 		9.8
(-3) 		14.6
(-1.6) 		21
(0.2) 		29.3
(2.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9748
Sequence Type Exemplar sequence
Representative Public ID Y45F10D.6 NCBI
Target Description Y45F10D.6 /REP_DB=WormBase Gene ID /WP=CE16644 /TR=O62476 /GB=CAA16381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070261 NCBI Caenorhabditis elegans Y45F10D.6 (Y45F10D.6) mRNA, complete cds. 11/11 None
SNAP00000025710 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13796224:13797864:-1 10/11 None
GENEFINDER00000025723 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13796224:13797864:-1 10/11 None
Y45F10D.6 ENSEMBL cdna:known chromosome:CEL140:IV:13796224:13798254:-1 gene:Y45F10D.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13796229-13798260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10D.6
Entrez Gene 189925 Entrez gene
SwissProt O62476 EMBL-EBI
WormBase CE16644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16381 Hypothetical protein Y45F10D.6 [Caenorhabditis elegans] ref|NP_502662.1| Y45F10D.6 [Caenorhabditis elegans] 1.0E-120
blast CAA16381 Hypothetical protein Y45F10D.6 [Caenorhabditis elegans] ref|NP_502662.1| Y45F10D.6 [Caenorhabditis elegans] 3.0E-91
blast CAE74599 Hypothetical protein CBG22381 [Caenorhabditis briggsae] 6.0E-82
blast CAE74599 Hypothetical protein CBG22381 [Caenorhabditis briggsae] 3.0E-68
blast CAB05263 Hypothetical protein R05A10.1 [Caenorhabditis elegans] emb|CAC42314.2| Hypothetical protein R05A10.1 [Caenorhabditis elegans] ref|NP_502721.2| R05A10.1 [Caenorhabditis elegans] 1.0E-41
Sequence
Target Sequence 
>C. ELEGANS:184224_AT
aacactttttgaccgtcgaaatcatcgtaacaaaagtcaactattcaggttgattgatag
caaaaaaagggtagtgatatcattttttcactgtttctataaacatgtctgcaagaaaaa
cggtcattcctacaaagtgggcgaggaattcgacgtcggaaatctccgttacacgtgtca
acaattcggtgtctacgtcatcgccggatgtcgaactcatctgggaagagcactggagct
gggtgatattttggtgcatgatcacgtgaaattccattgtttggcacatggaacttctgt
tttttatcgagaaactgcgtgtggcgggaagggagaaatcgattgtgatatggtaccact
gccacgtggatatgaacaagttgtgcagaatgagcatctagaaacaacagagcttccaaa
agagcactcaactcatataaatggaaaagagctgccaaaaggatgggttcttgtgcacgg
aggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTTTTTGACCGTCGAAATCAT 691 135 48 Antisense
AACGGTCATTCCTACAAAGTGGGCG 488 143 166 Antisense
GGAATTCGACGTCGGAAATCTCCGT 267 533 192 Antisense
ATCTCCGTTACACGTGTCAACAATT 653 33 209 Antisense
AACAATTCGGTGTCTACGTCATCGC 517 133 227 Antisense
GTCATCGCCGGATGTCGAACTCATC 534 465 244 Antisense
GGAGCTGGGTGATATTTTGGTGCAT 539 521 282 Antisense
GTTTGGCACATGGAACTTCTGTTTT 52 453 326 Antisense
GAAACTGCGTGTGGCGGGAAGGGAG 503 355 358 Antisense
GATATGGTACCACTGCCACGTGGAT 667 425 394 Antisense
GATGGGTTCTTGTGCACGGAGGAAA 303 407 509 Antisense
Sequence Source Affymetrix Proprietary Database