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[184223_at]

Description R02F11.2 /REP_DB=WormBase Gene ID /WP=CE12498 /TR=O16363 /GB=AAB65898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 11      6grp_total > 27      4grp_total > 13      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 798
1 2 3 4 range
A 560.4
(1.6)
P 		351.8
(-0.6)
P 		127.9
(-3)
A 		691.3
(3)
P 		563
B 529.9
(-0.2)
P 		288.2
(-2.2)
P 		183
(-3)
A 		925.6
(3)
P 		743
C 509.9
(-0.2)
P 		251.7
(-2.8)
M 		235.8
(-3)
P 		816.1
(3)
P 		580
avr 533.4
(0.4) 		297.2
(-1.9) 		182.2
(-3) 		811
(3) 		629

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 355.2
(3)
P 		310.1
(2)
P 		137
(-2)
A 		93.2
(-3)
A 		201.5
(-0.5)
A 		162.6
(-1.4)
P 		262
B 529.9
(3)
P 		247
(-1.4)
P 		153.4
(-2.8)
A 		184.1
(-2.4)
A 		142.3
(-3)
A 		235.8
(-1.6)
P 		388
C 386.8
(3)
P 		258.1
(-0.3)
P 		174.2
(-2.4)
A 		191.5
(-2)
P 		151
(-3)
M 		226.1
(-1.1)
P 		236
avr 424
(3) 		271.7
(-0.4) 		154.9
(-3) 		156.3
(-3) 		164.9
(-2.8) 		208.2
(-1.8) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 204
(3)
P 		76.4
(-1.5)
P 		33.4
(-3)
A 		101.2
(-0.6)
P 		171
B 169
(1.9)
P 		71.2
(-1.9)
P 		42.4
(-3)
A 		197.2
(3)
P 		155
C 168.8
(3)
P 		72.4
(-3)
M 		82.2
(-2.4)
P 		137.6
(1.1)
P 		96
avr 180.6
(3) 		73.3
(-2) 		52.7
(-3) 		145.3
(1.3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 65.5
(-0.1)
P 		110.3
(3)
P 		29.8
(-2.6)
A 		23.6
(-3)
A 		60.8
(-0.4)
A 		39.6
(-1.9)
P 		87
B 184.4
(3)
P 		82.2
(-1.2)
P 		37.3
(-3)
A 		48.8
(-2.5)
A 		57.8
(-2.2)
A 		87.9
(-0.9)
P 		147
C 143.4
(3)
P 		78.7
(-0.7)
P 		44.3
(-2.7)
A 		38.5
(-3)
P 		48.9
(-2.4)
M 		75.7
(-0.9)
P 		105
avr 131.1
(3) 		90.4
(0.4) 		37.1
(-3) 		37
(-3) 		55.8
(-1.8) 		67.7
(-1) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15405
Sequence Type Exemplar sequence
Representative Public ID R02F11.2 NCBI
Target Description R02F11.2 /REP_DB=WormBase Gene ID /WP=CE12498 /TR=O16363 /GB=AAB65898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071885 NCBI Caenorhabditis elegans R02F11.2 (R02F11.2) mRNA, complete cds. 11/11 None
SNAP00000015685 ENSEMBL cdna:SNAP chromosome:CEL140:V:4794501:4796685:1 11/11 None
GENEFINDER00000015695 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4788937:4796685:1 11/11 None
R02F11.2 ENSEMBL cdna:known chromosome:CEL140:V:4787280:4796685:1 gene:R02F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4787279-4796685(+) 95.22 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F11.2
Entrez Gene 187531 Entrez gene
SwissProt O16363 EMBL-EBI
WormBase CE36882 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65898 Hypothetical protein R02F11.2 [Caenorhabditis elegans] ref|NP_504286.3| R02F11.2 [Caenorhabditis elegans] 0.0
blast AAB65898 Hypothetical protein R02F11.2 [Caenorhabditis elegans] ref|NP_504286.3| R02F11.2 [Caenorhabditis elegans] 1.0E-103
blast CAE64203 Hypothetical protein CBG08834 [Caenorhabditis briggsae] 4.0E-85
blast CAE64203 Hypothetical protein CBG08834 [Caenorhabditis briggsae] 5.0E-85
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 3.0E-81
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 4.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 5.6E-7
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 5.8E-34
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.4E-35
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Pfam IPR001304 EMBL-EBI C-type lectin 5.6E-7
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.4E-35
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.5E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504286.3 3 187-206,227-246,642-664
R02F11.2 3 187-206,227-246,642-664
SNAP00000015685 1 160-182
GENEFINDER00000015695 3 121-140,176-195,627-649
Sequence
Target Sequence 
>C. ELEGANS:184223_AT
ccttccttgcgggatccgagtacgagcaaagtctcataggacatcttctcaactcgagcg
ctatggttactctgaacgatgacatcactactctcctggcgagcaccaatatgacataca
cccttgcttcacctgacgagccatttgtgttcgttgagcgcaactatttctggtctcaaa
aagacttcaacgagtacgccgacggtgaaaacaacacgatcttctcgtatgtttgcgtgt
acaacgcatctgaagacgaggggcttttctctcagatctattttccaagtggcgatcgga
ttcaagaggtggtattcggttgtgaggtctccaaggaatgttgtggaatgaagtgttgtg
gggatgacgtgctcatcaatattatcattgttggagtgatcagcttggctcttctgcttc
ttcttctctgcaatattctcatcgggttcaagaagagacgtgaaaagagccgagaaacca
atcttaaagccacctatcaagcaacagacaccactaacggagccattgacaatgatatca
tcagcgccgatcaaatcacctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCCTTGCGGGATCCGAGTACGA 416 267 2009 Antisense
GTCTCATAGGACATCTTCTCAACTC 84 471 2039 Antisense
AACTCGAGCGCTATGGTTACTCTGA 537 141 2059 Antisense
CTCTCCTGGCGAGCACCAATATGAC 653 229 2099 Antisense
CAATATGACATACACCCTTGCTTCA 353 181 2115 Antisense
GAGCGCAACTATTTCTGGTCTCAAA 709 385 2164 Antisense
CGATCTTCTCGTATGTTTGCGTGTA 149 249 2225 Antisense
GAAGACGAGGGGCTTTTCTCTCAGA 533 339 2260 Antisense
TTCTTCTTCTCTGCAATATTCTCAT 234 691 2426 Antisense
AACAGACACCACTAACGGAGCCATT 342 137 2511 Antisense
CATCAGCGCCGATCAAATCACCTAT 34 211 2547 Antisense
Sequence Source Affymetrix Proprietary Database