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[184220_at]

Description C56C10.4 /REP_DB=WormBase Gene ID /WP=CE02569 /TR=Q18883 /GB=AAA68772.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 34      6grp_highest_nonorm > 81      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 860
1 2 3 4 range
A 31.5
(-3)
A 		849.4
(3)
P 		745.8
(2.2)
P 		113
(-2.4)
M 		818
B 44.8
(-2.9)
A 		809.1
(2.9)
P 		828.5
(3)
P 		27.1
(-3)
A 		801
C 10.7
(-3)
A 		870.6
(3)
P 		691.1
(1.7)
P 		85.2
(-2.5)
A 		860
avr 29
(-3) 		843
(3) 		755.1
(2.4) 		75.1
(-2.7) 		814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 168.5
(-3)
P 		396
(3)
P 		233
(-1.3)
P 		321
(1)
P 		275.4
(-0.2)
P 		286.1
(0.1)
P 		228
B 216.9
(-3)
P 		339.3
(3)
P 		287
(0.4)
P 		261.6
(-0.8)
P 		245.5
(-1.6)
P 		287.1
(0.4)
P 		122
C 274.8
(-0.4)
P 		380
(2.6)
P 		180
(-3)
P 		396.2
(3)
P 		276.6
(-0.3)
P 		254.5
(-0.9)
P 		216
avr 220.1
(-3) 		371.8
(3) 		233.3
(-2.5) 		326.3
(1.2) 		265.8
(-1.2) 		275.9
(-0.8) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 11.5
(-3)
A 		184.4
(2.7)
P 		195
(3)
P 		16.5
(-2.8)
M 		184
B 14.3
(-2.7)
A 		199.8
(3)
P 		192
(2.8)
P 		5.8
(-3)
A 		194
C 3.5
(-3)
A 		250.3
(3)
P 		240.9
(2.8)
P 		14.4
(-2.7)
A 		247
avr 9.8
(-3) 		211.5
(3) 		209.3
(2.9) 		12.2
(-2.9) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 31.1
(-3)
P 		140.8
(3)
P 		50.8
(-1.9)
P 		81.4
(-0.2)
P 		83.1
(-0.2)
P 		69.6
(-0.9)
P 		110
B 75.5
(-2.1)
P 		112.9
(3)
P 		69.7
(-2.9)
P 		69.3
(-3)
P 		99.7
(1.2)
P 		107
(2.2)
P 		44
C 101.8
(1.8)
P 		116
(3)
P 		45.8
(-3)
P 		79.7
(-0.1)
P 		89.5
(0.7)
P 		85.2
(0.4)
P 		70
avr 69.5
(-1.8) 		123.2
(3) 		55.4
(-3) 		76.8
(-1.1) 		90.8
(0.1) 		87.3
(-0.2) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5739
Sequence Type Exemplar sequence
Representative Public ID C56C10.4 NCBI
Target Description C56C10.4 /REP_DB=WormBase Gene ID /WP=CE02569 /TR=Q18883 /GB=AAA68772.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062933 NCBI Caenorhabditis elegans C56C10.4 (C56C10.4) mRNA, complete cds. 11/11 None
SNAP00000022062 ENSEMBL cdna:SNAP chromosome:CEL140:II:6583022:6584313:1 11/11 None
GENEFINDER00000022078 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6583022:6584313:1 11/11 None
C56C10.4 ENSEMBL cdna:known chromosome:CEL140:II:6583022:6584443:1 gene:C56C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6583018-6584310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56C10.4
Entrez Gene 174088 Entrez gene
SwissProt Q18883 EMBL-EBI
WormBase CE02569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68772 Hypothetical protein C56C10.4 [Caenorhabditis elegans] ref|NP_495334.1| C56C10.4 [Caenorhabditis elegans] 1.0E-114
blast CAE60669 Hypothetical protein CBG04322 [Caenorhabditis briggsae] 1.0E-104
blast NP_501132 C42D4.3 [Caenorhabditis elegans] gb|AAA83347.1| Hypothetical protein C42D4.3 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 1.5E-63
Sequence
Target Sequence 
>C. ELEGANS:184220_AT
gcactcggctagttcgtgcgtagcttctggcacatgtggcctcgggccttgtttcaatcc
tctacctgctctcccatccccttgtgcatctgctggatgtggtccaggcttttcatgtgg
atcatatggctgctaccgtaccaaagcacgtgtccatgccgctggaactcatcagggtcc
gattctattcggagctgatcgtttttcacaattccgtcgtcaacagccaccaccttctca
acaagcatcggatcccaatgcgttattcatgcaatgttgtgagcaaagaggtctaccaga
tgcatgtcttcagaaatgtacattcaatacttacactaaggaatcgttaacccgtatgta
cttccgtcaagattcatgcccattagctgcttctgccgaaattcaattctgtgccgctca
aggaagagatcatcgtgcatgctgtacaagaaacggtgtcacgactacacttgctggtga
caaatgtttaacattctgtgatcagagacctggaaacgtgacacttcttgactattccta
cgtatcttgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACTCGGCTAGTTCGTGCGTAGCT 646 315 60 Antisense
TGCGTAGCTTCTGGCACATGTGGCC 427 581 76 Antisense
TGGATCATATGGCTGCTACCGTACC 677 549 177 Antisense
GAACTCATCAGGGTCCGATTCTATT 403 349 224 Antisense
TTTCACAATTCCGTCGTCAACAGCC 485 671 263 Antisense
ACCACCTTCTCAACAAGCATCGGAT 374 85 288 Antisense
GAGGTCTACCAGATGCATGTCTTCA 299 403 347 Antisense
ATTAGCTGCTTCTGCCGAAATTCAA 467 13 441 Antisense
CGGTGTCACGACTACACTTGCTGGT 103 245 513 Antisense
AACGTGACACTTCTTGACTATTCCT 286 143 574 Antisense
TGACTATTCCTACGTATCTTGCTAC 188 571 588 Antisense
Sequence Source Affymetrix Proprietary Database