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[184219_at]

Description C07F11.2 /REP_DB=WormBase Gene ID /WP=CE23528 /TR=Q9N5Z4 /GB=AAF39751.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 78      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 170.8
(-1.2)
P 		92.8
(-2.9)
A 		86.5
(-3)
A 		360.1
(3)
P 		274
B 102.6
(-2.1)
P 		84.8
(-2.4)
A 		44
(-3)
A 		451
(3)
P 		407
C 159.6
(-1.1)
P 		57.2
(-3)
A 		86.2
(-2.5)
A 		385
(3)
P 		328
avr 144.3
(-1.7) 		78.3
(-2.9) 		72.2
(-3) 		398.7
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 110.7
(-2.7)
M 		98.8
(-3)
A 		98.8
(-3)
A 		109.7
(-2.7)
P 		214.5
(-0.1)
P 		341.9
(3)
P 		243
B 147.5
(-2.2)
P 		142.4
(-2.3)
P 		102.5
(-3)
P 		139.8
(-2.3)
P 		254.4
(-0.3)
P 		441
(3)
P 		339
C 101.5
(-2.3)
A 		142.3
(-1.7)
P 		55
(-3)
A 		188.7
(-1)
P 		167.6
(-1.3)
P 		447
(3)
P 		392
avr 119.9
(-2.4) 		127.8
(-2.2) 		85.4
(-3) 		146.1
(-1.9) 		212.2
(-0.7) 		410
(3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 62.2
(3)
P 		20.1
(-3)
A 		22.6
(-2.6)
A 		52.7
(1.6)
P 		42
B 32.7
(-1.4)
P 		21
(-2.2)
A 		10.2
(-3)
A 		96.1
(3)
P 		86
C 52.8
(1.5)
P 		16.5
(-3)
A 		30
(-1.3)
A 		64.9
(3)
P 		48
avr 49.2
(0.5) 		19.2
(-3) 		20.9
(-2.8) 		71.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 20.4
(-3)
M 		35.1
(-1.6)
A 		21.5
(-2.9)
A 		27.8
(-2.3)
P 		64.7
(1.2)
P 		83.2
(3)
P 		63
B 51.3
(-1.9)
P 		47.4
(-2)
P 		24.9
(-3)
P 		37
(-2.5)
P 		103.3
(0.4)
P 		164.4
(3)
P 		140
C 37.6
(-2)
A 		43.4
(-1.7)
P 		14
(-3)
A 		37.9
(-1.9)
P 		54.2
(-1.2)
P 		149.6
(3)
P 		136
avr 36.4
(-2.1) 		42
(-1.8) 		20.1
(-3) 		34.2
(-2.2) 		74.1
(-0.1) 		132.4
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2568
Sequence Type Exemplar sequence
Representative Public ID C07F11.2 NCBI
Target Description C07F11.2 /REP_DB=WormBase Gene ID /WP=CE23528 /TR=Q9N5Z4 /GB=AAF39751.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058331 NCBI Caenorhabditis elegans C07F11.2 (C07F11.2) mRNA, complete cds. 11/11 None
SNAP00000040488 ENSEMBL cdna:SNAP chromosome:CEL140:I:420937:423654:1 11/11 None
GENEFINDER00000040494 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:420937:423654:1 11/11 None
C07F11.2 ENSEMBL cdna:known chromosome:CEL140:I:420925:423657:1 gene:C07F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:420936-423654(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07F11.2
Entrez Gene 171634 Entrez gene
SwissProt Q9N5Z4 EMBL-EBI
WormBase CE23528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39751 Hypothetical protein C07F11.2 [Caenorhabditis elegans] ref|NP_490732.1| C07F11.2 [Caenorhabditis elegans] 0.0
blast CAE74339 Hypothetical protein CBG22054 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184219_AT
gagcaacgtcgtctatcgttcatgtgtgacagtcgaaccgaggatgattctgaaggggaa
gattgtgaagacaatgaagaagatgatggagaaggtggctccgatgatgaggaagacgat
ggagaggagcctcattttgaatgtgataagagtgataaggagcatgtccacgatatgcta
gcaaatctatacttcaacaaagtagtccttcccgaaatggaatatgtcgaggattttgtg
gatttcctgattgatgcggagctcaatgacttgccagttctcaaaagagcttgtgagagg
tatttgtgcagtgagctgaattcgaaaaaagacattggaacttgtctcctgttggatttg
cttttcaactcgattgtattcaacttgcctgttatgaagtcgatgaccttgacggagttg
gcgaatcgaacgcacgagtttgtggatgctgacacacttttggatcaggaagagtttaaa
aacctggataaaagaatgcgaacgcttgccgatcggaatctcgtggagctcatcgagcaa
tgtgttacgtttcgtgaccaaaaagcaagagttcgcgttttgccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAACGTCGTCTATCGTTCATGT 66 391 838 Antisense
TCAACAAAGTAGTCCTTCCCGAAAT 600 627 1031 Antisense
GGATTTCCTGATTGATGCGGAGCTC 499 509 1077 Antisense
GAGCTCAATGACTTGCCAGTTCTCA 157 389 1096 Antisense
GGAACTTGTCTCCTGTTGGATTTGC 482 529 1174 Antisense
GGATTTGCTTTTCAACTCGATTGTA 336 507 1191 Antisense
GATGACCTTGACGGAGTTGGCGAAT 317 411 1239 Antisense
GTGGATGCTGACACACTTTTGGATC 664 489 1279 Antisense
AAGAATGCGAACGCTTGCCGATCGG 700 151 1329 Antisense
GCCGATCGGAATCTCGTGGAGCTCA 645 283 1345 Antisense
AAGCAAGAGTTCGCGTTTTGCCGAC 350 151 1400 Antisense
Sequence Source Affymetrix Proprietary Database