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[184218_at]

Description W06B11.1 /REP_DB=WormBase Gene ID /WP=CE28508 /TR=Q23192 /GB=AAA81078.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 325.7
(1.1)
P 		450.7
(3)
A 		360.2
(1.7)
M 		46.7
(-3)
A 		404
B 530.8
(2.6)
P 		551
(3)
A 		373.6
(-0.5)
M 		243.9
(-3)
A 		307
C 500.8
(1.7)
P 		572.4
(3)
M 		391.7
(-0.3)
P 		248
(-3)
A 		324
avr 452.4
(1.7) 		524.7
(3) 		375.2
(0.4) 		179.5
(-3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 423.4
(1.1)
P 		575.2
(3)
P 		386.1
(0.7)
P 		318.7
(-0.2)
P 		352.1
(0.2)
A 		89.7
(-3)
A 		486
B 371.3
(3)
P 		305.4
(1.5)
M 		244
(0)
P 		224.2
(-0.4)
A 		186
(-1.3)
A 		114.9
(-3)
A 		256
C 449.9
(3)
P 		237.1
(-1.9)
M 		384.5
(1.5)
A 		196.9
(-2.9)
A 		191.7
(-3)
P 		215.8
(-2.4)
A 		258
avr 414.9
(3) 		372.6
(2.1) 		338.2
(1.3) 		246.6
(-0.7) 		243.3
(-0.7) 		140.1
(-3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 118.6
(3)
P 		97.8
(1.9)
A 		94.2
(1.7)
M 		6.8
(-3)
A 		112
B 169.3
(3)
P 		136.1
(1.3)
A 		86.6
(-1.2)
M 		52
(-3)
A 		117
C 165.8
(3)
P 		164.6
(2.9)
M 		136.5
(1.6)
P 		41.8
(-3)
A 		124
avr 151.2
(3) 		132.8
(2.1) 		105.8
(0.7) 		33.5
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 78.1
(-1.2)
P 		204.6
(3)
P 		84.1
(-1)
P 		80.8
(-1.1)
P 		106.3
(-0.2)
A 		21.8
(-3)
A 		183
B 129.2
(3)
P 		101.7
(1.1)
M 		59.3
(-1.9)
P 		59.4
(-1.9)
A 		75.6
(-0.7)
A 		42.9
(-3)
A 		86
C 166.8
(3)
P 		72.3
(-1.5)
M 		97.9
(-0.3)
A 		39.6
(-3)
A 		62
(-1.9)
P 		72.2
(-1.5)
A 		127
avr 124.7
(2.9) 		126.2
(3) 		80.4
(-0.4) 		59.9
(-1.9) 		81.3
(-0.3) 		45.6
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17015
Sequence Type Exemplar sequence
Representative Public ID W06B11.1 NCBI
Target Description W06B11.1 /REP_DB=WormBase Gene ID /WP=CE28508 /TR=Q23192 /GB=AAA81078.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076580(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076580 NCBI Caenorhabditis elegans W06B11.1 (W06B11.1) mRNA, complete cds. 10/11 A 
SNAP00000035431 ENSEMBL cdna:SNAP chromosome:CEL140:X:5849066:5851752:1 10/11 None
GENEFINDER00000035435 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5849066:5851752:1 10/11 None
W06B11.1 ENSEMBL cdna:known chromosome:CEL140:X:5849062:5851858:1 gene:W06B11.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5849065-5851752(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06B11.1
Entrez Gene 180852 Entrez gene
SwissProt Q23192 EMBL-EBI
WormBase CE28508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81078 Hypothetical protein W06B11.1 [Caenorhabditis elegans] ref|NP_508981.1| W06B11.1 [Caenorhabditis elegans] 1.0E-144
blast CAE68811 Hypothetical protein CBG14763 [Caenorhabditis briggsae] 1.0E-116
blast AAH65981 Hypothetical protein LOC406389 [Danio rerio] ref|NP_998423.1| hypothetical protein LOC406389 [Danio rerio] 8.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR007965 EMBL-EBI Protein of unknown function DUF738 1.1E-85
Sequence
Target Sequence 
>C. ELEGANS:184218_AT
aaagggttgcttcgagttggatataaaacgctttatctgacagataatgaacaaaatcag
tacatggaaaaagcaatgtgcattttggactttttcgttgtgcccaccgaacaacgctcc
ggaaatggattcaaaatgtttgatgaaatgttaaaagctgaaaacgtaacagtagaccaa
tgcgcattcgacaaaccatcagctgctctccaacaatttctagaaaaatattatgataga
aaagatttggaaaattcaaataggaaagaattattgaactcatccatttttatcaataat
acttgtcgaaagcttgccggaaattatggcaatcaaacaaatatgcattatgttcaaatt
ttttcattggacgtcacccaactgttccattcacccctcgccagacaaaacgagcgtctc
gagccagttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGGTTGCTTCGAGTTGGATATA 451 121 265 Antisense
TGTGCATTTTGGACTTTTTCGTTGT 379 557 341 Antisense
TTCGTTGTGCCCACCGAACAACGCT 289 693 358 Antisense
GAACAACGCTCCGGAAATGGATTCA 653 351 373 Antisense
GTAACAGTAGACCAATGCGCATTCG 467 461 430 Antisense
GCGCATTCGACAAACCATCAGCTGC 111 289 446 Antisense
AGCTGCTCTCCAACAATTTCTAGAA 450 81 465 Antisense
GAACTCATCCATTTTTATCAATAAT 499 349 540 Antisense
TCATTGGACGTCACCCAACTGTTCC 408 613 628 Antisense
CACCCCTCGCCAGACAAAACGAGCG 369 199 656 Antisense
AAACGAGCGTCTCGAGCCAGTTCAG 304 127 672 Antisense
Sequence Source Affymetrix Proprietary Database