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[184217_at]

Description C34F11.1 /REP_DB=WormBase Gene ID /WP=CE04162 /TR=Q18466 /GB=AAA85765.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.2
(-3)
A 		10.1
(1.5)
A 		7.1
(-0.5)
A 		12.4
(3)
A 		9
B 3.1
(-3)
A 		8
(-1.1)
A 		18.8
(3)
A 		9.6
(-0.5)
A 		16
C 24.2
(-1.3)
A 		5.9
(-2.9)
A 		4.9
(-3)
A 		72.6
(3)
A 		68
avr 10.2
(-2.4) 		8
(-3) 		10.3
(-2.4) 		31.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 29.8
(-1.1)
A 		7.8
(-3)
A 		30.4
(-1)
A 		18.8
(-2)
A 		75.9
(3)
A 		34.1
(-0.7)
A 		68
B 21.4
(-1.5)
A 		40.3
(1.1)
A 		10.4
(-3)
A 		29
(-0.4)
A 		53.9
(3)
A 		34.2
(0.3)
A 		44
C 6.7
(-2.9)
A 		60.8
(2)
A 		6
(-3)
A 		54.3
(1.4)
A 		20.9
(-1.7)
A 		72.4
(3)
A 		66
avr 19.3
(-2.4) 		36.3
(0.6) 		15.6
(-3) 		34
(0.2) 		50.2
(3) 		46.9
(2.4) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.2
(-3)
A 		2.2
(3)
A 		1.8
(0.6)
A 		1.8
(0.6)
A 		1
B 1
(-3)
A 		2
(-1.2)
A 		4.3
(3)
A 		2
(-1.2)
A 		3
C 8
(0.6)
A 		1.7
(-3)
A 		1.7
(-3)
A 		12.2
(3)
A 		11
avr 3.4
(-0.5) 		2
(-3) 		2.6
(-1.9) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.5
(-2.2)
A 		2.8
(-3)
A 		6.6
(-1.9)
A 		4.8
(-2.4)
A 		22.9
(3)
A 		8.3
(-1.4)
A 		20
B 7.4
(-1.5)
A 		13.4
(0.4)
A 		2.5
(-3)
A 		7.7
(-1.4)
A 		21.9
(3)
A 		12.7
(0.2)
A 		19
C 2.5
(-2.7)
A 		18.6
(1.5)
A 		1.5
(-3)
A 		10.9
(-0.5)
A 		6.7
(-1.6)
A 		24.2
(3)
A 		23
avr 5.1
(-2.3) 		11.6
(0.5) 		3.5
(-3) 		7.8
(-1.1) 		17.2
(3) 		15.1
(2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5372
Sequence Type Exemplar sequence
Representative Public ID C34F11.1 NCBI
Target Description C34F11.1 /REP_DB=WormBase Gene ID /WP=CE04162 /TR=Q18466 /GB=AAA85765.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062576 NCBI Caenorhabditis elegans C34F11.1 (C34F11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021350 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5212973:5213876:1 11/11 None
C34F11.1 ENSEMBL cdna:known chromosome:CEL140:II:5212973:5213903:1 gene:C34F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021333 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5212970-5213874(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F11.1
Entrez Gene 173893 Entrez gene
SwissProt Q18466 EMBL-EBI
WormBase CE04162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85765 Hypothetical protein C34F11.1 [Caenorhabditis elegans] ref|NP_494977.1| C34F11.1 [Caenorhabditis elegans] 1.0E-123
blast CAB05629 Hypothetical protein T23F6.3 [Caenorhabditis elegans] ref|NP_502431.2| T23F6.3 [Caenorhabditis elegans] 5.0E-15
blast CAB03425 Hypothetical protein T24D1.3 [Caenorhabditis elegans] ref|NP_492633.1| T24D1.3 [Caenorhabditis elegans] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:184217_AT
gagtttgctcgtttccaacaagttcgcgatgactcgcggtacgcacaggacgttgaacgt
gagttcgtgttggggcccattcgacaccaccgacggcagctggagccatcaagatctgct
ccgttggcttccacagagcagccagtagctcaggctaccacacatccgtcaaccgagaat
gcacgggtaccagctctagttctaagatcaggctcatggcgagctcttccagtggcacaa
ggcggttcctcacatattcgtatctggccggtgtcacggagtgctacaacaacttcgacg
gcaactcgtcatccaccattcaccaatacttcggcatcaacttcatttgcaccatatcaa
cgtcaccgaggaagtgctctacaaacttcggaatgcaccatttgctttgagaagcccgtt
gatccgagaggatgtcctaaatgcctcaaagtcattggctgtaaaaaatgtgtgaaaaaa
tggtttgatacgtctgcatcgaaggcgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGCTCGTTTCCAACAAGTTC 468 397 82 Antisense
GGGTACCAGCTCTAGTTCTAAGATC 295 497 266 Antisense
GATCAGGCTCATGGCGAGCTCTTCC 393 421 287 Antisense
AGCTCTTCCAGTGGCACAAGGCGGT 92 81 303 Antisense
ACAAGGCGGTTCCTCACATATTCGT 576 113 318 Antisense
GTATCTGGCCGGTGTCACGGAGTGC 311 453 341 Antisense
GGAGTGCTACAACAACTTCGACGGC 191 515 359 Antisense
ATTCACCAATACTTCGGCATCAACT 508 11 399 Antisense
TGCACCATATCAACGTCACCGAGGA 585 577 429 Antisense
GCTTTGAGAAGCCCGTTGATCCGAG 422 303 485 Antisense
GATACGTCTGCATCGAAGGCGTGCC 654 423 568 Antisense
Sequence Source Affymetrix Proprietary Database