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[184216_at] 7TM chemoreceptor, sra family

Description C56C10.5 /REP_DB=WormBase Gene ID /WP=CE02570 /TR=Q18881 /GB=AAA68773.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 14      6grp_cgc > 70      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 178.6
(3)
M 		90.6
(-3)
M 		104.5
(-2.1)
M 		171.5
(2.5)
A 		88
B 121.9
(2.7)
P 		122.6
(2.9)
A 		123.1
(3)
P 		96.5
(-3)
P 		27
C 122.7
(-0.6)
P 		108.6
(-1.2)
A 		66.7
(-3)
A 		206.2
(3)
P 		140
avr 141.1
(1.3) 		107.3
(-2.1) 		98.1
(-3) 		158.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 146.3
(3)
A 		65.6
(-1.4)
A 		94.4
(0.2)
P 		49.3
(-2.2)
A 		83.2
(-0.4)
A 		35.4
(-3)
A 		111
B 78.8
(-0.3)
M 		111.1
(3)
P 		89.9
(0.8)
M 		107.1
(2.6)
A 		90.9
(0.9)
P 		52.8
(-3)
M 		58
C 101.8
(1.3)
P 		126
(2.7)
P 		130.8
(3)
A 		63.8
(-1)
A 		50.4
(-1.8)
A 		29.7
(-3)
A 		101
avr 109
(3) 		100.9
(2.3) 		105
(2.7) 		73.4
(-0.1) 		74.8
(0.1) 		39.3
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 65
(3)
M 		19.7
(-3)
M 		27.3
(-2)
M 		25.1
(-2.3)
A 		45
B 38.9
(3)
P 		30.3
(0.2)
A 		28.5
(-0.4)
P 		20.6
(-3)
P 		18
C 40.6
(3)
P 		31.2
(-0.3)
A 		23.3
(-3)
A 		34.8
(1)
P 		17
avr 48.2
(3) 		27.1
(-2.8) 		26.4
(-3) 		26.8
(-2.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 27
(3)
A 		23.3
(1.8)
A 		20.6
(0.9)
P 		12.5
(-1.7)
A 		25.1
(2.4)
A 		8.6
(-3)
A 		18
B 27.4
(-0.3)
M 		37
(3)
P 		21.8
(-2.3)
M 		28.4
(0)
A 		36.9
(3)
P 		19.7
(-3)
M 		17
C 37.7
(2.8)
P 		38.5
(3)
P 		33.3
(1.9)
A 		12.8
(-2.4)
A 		16.3
(-1.7)
A 		9.9
(-3)
A 		29
avr 30.7
(2.3) 		32.9
(3) 		25.2
(0.7) 		17.9
(-1.5) 		26.1
(1) 		12.7
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5369
Sequence Type Exemplar sequence
Representative Public ID C56C10.5 NCBI
Target Description C56C10.5 /REP_DB=WormBase Gene ID /WP=CE02570 /TR=Q18881 /GB=AAA68773.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062931 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-31) (sra-31) mRNA, complete cds. 11/11 None
GENEFINDER00000022082 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6577158:6578418:-1 11/11 None
C56C10.5 ENSEMBL cdna:known chromosome:CEL140:II:6577158:6578418:-1 gene:C56C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6577154-6578352(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-31
Ensembl C56C10.5
Entrez Gene 183858 Entrez gene
SwissProt Q18881 EMBL-EBI
WormBase CE33522 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68773 Serpentine receptor, class a (alpha) protein 31 [Caenorhabditis elegans] ref|NP_495332.2| Serpentine Receptor, class A (alpha) family member (sra-31) [Caenorhabditis elegans] sp|Q18881|SRA31_CAEEL Serpentine receptor class alpha-31 (Protein sra-31) 1.0E-180
blast CAE60670 Hypothetical protein CBG04323 [Caenorhabditis briggsae] 9.0E-84
blast AAA68414 Serpentine receptor, class a (alpha) protein 29 [Caenorhabditis elegans] ref|NP_495331.1| Serpentine Receptor, class A (alpha) family member (sra-29) [Caenorhabditis elegans] sp|Q19552|SRA29_CAEEL Serpentine receptor class alpha-29 (Protein sra-29) 5.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495332.2 6 21-43,58-75,141-163,191-210,234-256,271-293
C56C10.5 6 21-43,58-75,141-163,191-210,234-256,271-293
GENEFINDER00000022082 6 21-43,58-75,141-163,191-210,234-256,271-293
Sequence
Target Sequence 
>C. ELEGANS:184216_AT
atcctataacaccaaacatttctccaaaatatttttgctttttcaatctatttctccatt
tggtattctctattggatattttatgactcagtatatactggatttgttccaatgtgcag
ttatcctcctgcaacgtcttctttaaaatttcataaagtgaacgagtttcgactatatat
tttgggaacattttttgttctctcttttgtgatatttttctacaacagaacacaagaaaa
gggaataatccacaacgtttatgacactgaatctcgatacaaatcatatgaaaatctact
tgcaactagagctgtttgtataatcattgcaactcaaataacctgcctcgtgactaccgc
ttcgacaactgaaattctctccgcatacaagtcttcaatccctaatacaattcttttacc
ttccatcgcttttatgacgggcttgacatactctaatttctttctgccaattattattat
atatcaaacaaatcgaattatcaaccaaagatataatgcaataaaaaggattcaaaatga
aaaaagttttgcgactcactttgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTATAACACCAAACATTTCTCC 216 39 354 Antisense
TTGCTTTTTCAATCTATTTCTCCAT 421 703 388 Antisense
TGTTCCAATGTGCAGTTATCCTCCT 194 563 459 Antisense
CTCCTGCAACGTCTTCTTTAAAATT 587 233 479 Antisense
AACTCAAATAACCTGCCTCGTGACT 621 139 684 Antisense
GACTACCGCTTCGACAACTGAAATT 654 371 705 Antisense
AAATTCTCTCCGCATACAAGTCTTC 565 115 725 Antisense
ACAAGTCTTCAATCCCTAATACAAT 581 113 740 Antisense
TAATACAATTCTTTTACCTTCCATC 671 633 756 Antisense
GACATACTCTAATTTCTTTCTGCCA 280 371 798 Antisense
AAAGTTTTGCGACTCACTTTGCTTC 70 123 896 Antisense
Sequence Source Affymetrix Proprietary Database