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[184215_at]

Description Y73F8A.11 /REP_DB=WormBase Gene ID /WP=CE22980 /TR=Q9NA59 /GB=CAB60536.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2607
1 2 3 4 range
A 49
(-2.9)
A 		7.7
(-3)
A 		13.6
(-3)
A 		2614.9
(3)
P 		2607
B 10.9
(-3)
A 		7.6
(-3)
A 		47.1
(-2.9)
A 		2286.3
(3)
P 		2279
C 47.5
(-2.9)
A 		27.5
(-3)
A 		61.4
(-2.9)
A 		2326.6
(3)
P 		2299
avr 35.8
(-2.9) 		14.3
(-3) 		40.7
(-2.9) 		2409.3
(3) 		2395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 8
(-3)
A 		17
(-2.9)
A 		114
(-2.3)
A 		229.5
(-1.5)
P 		614.3
(1)
P 		909.9
(3)
P 		902
B 12.7
(-3)
A 		48.8
(-2.7)
A 		143.9
(-2)
A 		366.9
(-0.4)
P 		660.6
(1.8)
P 		829
(3)
P 		816
C 6
(-3)
A 		77.8
(-2.5)
A 		146.5
(-2)
A 		247.8
(-1.3)
P 		502
(0.5)
P 		854.9
(3)
P 		849
avr 8.9
(-3) 		47.9
(-2.7) 		134.8
(-2.1) 		281.4
(-1.1) 		592.3
(1.1) 		864.6
(3) 		856
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 17.8
(-2.7)
A 		1.7
(-3)
A 		3.6
(-3)
A 		382.8
(3)
P 		381
B 3.5
(-3)
A 		1.9
(-3)
A 		10.9
(-2.9)
A 		487.2
(3)
P 		485
C 15.7
(-2.9)
A 		7.9
(-3)
A 		21.4
(-2.8)
A 		392.3
(3)
P 		384
avr 12.3
(-2.9) 		3.8
(-3) 		12
(-2.9) 		420.8
(3) 		417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 1.5
(-3)
A 		6
(-2.9)
A 		24.8
(-2.4)
A 		58.2
(-1.5)
P 		185.4
(2)
P 		221.5
(3)
P 		220
B 4.4
(-3)
A 		16.2
(-2.8)
A 		34.9
(-2.4)
A 		97.2
(-1.2)
P 		268.4
(2.2)
P 		309.1
(3)
P 		305
C 2.2
(-3)
A 		23.7
(-2.5)
A 		37.3
(-2.3)
A 		49.8
(-2)
P 		162.4
(0.4)
P 		286.2
(3)
P 		284
avr 2.7
(-3) 		15.3
(-2.7) 		32.3
(-2.3) 		68.4
(-1.5) 		205.4
(1.5) 		272.3
(3) 		270
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9743
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.11 NCBI
Target Description Y73F8A.11 /REP_DB=WormBase Gene ID /WP=CE22980 /TR=Q9NA59 /GB=CAB60536.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070445 NCBI Caenorhabditis elegans Y73F8A.11 (Y73F8A.11) mRNA, complete cds. 11/11 None
SNAP00000030813 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15305169:15309345:1 10/11 None
GENEFINDER00000030900 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15302201:15309345:1 11/11 None
Y73F8A.11 ENSEMBL cdna:known chromosome:CEL140:IV:15302201:15309345:1 gene:Y73F8A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15302206-15309351(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.11
Entrez Gene 190674 Entrez gene
SwissProt Q9NA59 EMBL-EBI
WormBase CE22980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60536 Hypothetical protein Y73F8A.11 [Caenorhabditis elegans] ref|NP_502846.1| Y73F8A.11 [Caenorhabditis elegans] 0.0
blast CAE68089 Hypothetical protein CBG13726 [Caenorhabditis briggsae] 0.0
blast CAB60536 Hypothetical protein Y73F8A.11 [Caenorhabditis elegans] ref|NP_502846.1| Y73F8A.11 [Caenorhabditis elegans] 2.0E-99
blast CAE68089 Hypothetical protein CBG13726 [Caenorhabditis briggsae] 1.0E-91
blast CAE69222 Hypothetical protein CBG15262 [Caenorhabditis briggsae] 3.0E-84
blast AAB37559 Hypothetical protein C09B9.3 [Caenorhabditis elegans] ref|NP_500706.1| C09B9.3 [Caenorhabditis elegans] sp|Q17851|YAVK_CAEEL Hypothetical protein C09B9.3 in chromosome IV 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 9.3E-47
Pfam IPR000615 EMBL-EBI Bestrophin 2.8E-35
Pfam IPR000615 EMBL-EBI Bestrophin 1.2E-72
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502846.1 5 51-73,88-110,302-324,354-371,384-406
Y73F8A.11 5 51-73,88-110,302-324,354-371,384-406
SNAP00000030813 4 31-53,58-80,193-215,230-249
GENEFINDER00000030900 5 51-73,88-110,302-324,354-371,384-406
Sequence
Target Sequence 
>C. ELEGANS:184215_AT
gatacgattcaattcttttacgcttttacgctttacggcttttacgggagcaacattaaa
gaattccgtcaatctatggaaatgctaacaaaatatgattgggttccaattcccatcgcc
tatccacaggtcgttttcctcgctgtacgtgtctacttcatcatttgtctggtatcccgt
caatatcttctctcggctccgccaactgaagctcaatcgattgtcccaattatgacaatt
ttgcaatttgtattttttgtcgggtggatgaaggtagccgaagcattactgaatcctctc
ggagaagacgatgatgatttcgaatgtaattggttgattgacagaaatatgtcaactgga
atcgaaatagtcgacacgtgtcatgattcttgtccgccactgaaactcgatgaacctgat
gatgaatcgggaactatgtattggtgccacccaacaaaaaatggttctcaagctccgcct
tctgcagttgcaatctcccaacataaaaatccatttacaaaggttctaaacatggtgcac
ccattttcatccggtacatcatccaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACGATTCAATTCTTTTACGCTT 210 423 1069 Antisense
TCGCTGTACGTGTCTACTTCATCAT 122 601 1208 Antisense
TCATCATTTGTCTGGTATCCCGTCA 49 619 1226 Antisense
GAAGCTCAATCGATTGTCCCAATTA 552 341 1276 Antisense
AGCCGAAGCATTACTGAATCCTCTC 272 83 1344 Antisense
GACACGTGTCATGATTCTTGTCCGC 663 367 1441 Antisense
TTGTCCGCCACTGAAACTCGATGAA 182 707 1458 Antisense
TCGGGAACTATGTATTGGTGCCACC 477 605 1495 Antisense
GCAATCTCCCAACATAAAAATCCAT 457 317 1558 Antisense
AAACATGGTGCACCCATTTTCATCC 391 129 1596 Antisense
TTCATCCGGTACATCATCCAATTCA 218 689 1614 Antisense
Sequence Source Affymetrix Proprietary Database